SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000184110
Gene: EIF3C Gene type: protein_coding
Strand: + External links:
Genomic region: chr16:28688558-28735727 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_104600496 chr16:28276283-28383443 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 496 35 1830 137 4 267 3089 NPIPB6,EIF3CL,EIF3C,SBK1,MIR6862-1
SE_02_104901711 chr16:28359712-28401562 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 1711 18 281 26 0 105 1427 MIR6862-2,NPIPB6,EIF3CL,EIF3C,MIR6862-1
SE_02_040300414 chr16:28363736-28404549 Sample_02_0403 Mammary gland T-47D_untreat 414 5 255 25 0 122 1495 EIF3C,EIF3CL
SE_02_099100866 chr16:28363861-28386796 Sample_02_0991 Breast cancer cell line lung metastatic variant MDA-MB-231 LM2 866 5 210 23 0 40 413 EIF3CL,EIF3C,NPIPB6,MIR6862-1
SE_02_015100637 chr16:28363886-28386402 Sample_02_0151 Mammary gland MDA-MB-231_TA1del 637 3 210 23 0 40 413 EIF3C,EIF3CL
SE_02_015000729 chr16:28363921-28386155 Sample_02_0150 Mammary gland MDA-MB-231_GATA3 729 3 210 23 0 40 413 EIF3C,EIF3CL
SE_02_028000371 chr16:28363977-28386223 Sample_02_0280 Mammary gland SUM159_DMSO_24h 371 3 210 23 0 40 413 EIF3C,EIF3CL
SE_02_132201001 chr16:28364322-28385425 Sample_02_1322 Connective Tissue HT1080_WT 1001 5 208 23 0 40 413 EIF3CL,EIF3C,NPIPB6,MIR6862-1
SE_02_021600480 chr16:28364333-28400978 Sample_02_0216 Skin NHEK_scramble 480 7 248 25 0 93 1218 EIF3C,EIF3CL
SE_02_011200761 chr16:28370570-28386256 Sample_02_0112 Connective tissue HT1080_untreated 761 2 161 18 0 40 413 EIF3C,EIF3CL
SE_02_141600757 chr16:28372374-28399310 Sample_02_1416 Brain SF9402 757 5 169 18 0 78 1042 MIR6862-2,EIF3CL,EIF3C,NPIPB6,MIR6862-1
SE_02_021500309 chr16:28374286-28389081 Sample_02_0215 Skin NHEK_siGRHL3 309 5 125 16 0 50 578 EIF3C,EIF3CL
SE_02_011600638 chr16:28379005-28387489 Sample_02_0116 Mammary gland MDA-MB-231_untreat 638 1 26 1 0 40 413 EIF3C,EIF3CL
SE_02_055701167 chr16:28380726-28385136 Sample_02_0557 iPSCs WT hiPSC#1 1167 1 11 1 0 21 169 EIF3CL,EIF3C,NPIPB6,MIR6862-1
SE_02_005500232 chr16:28380801-28386310 Sample_02_0055 Lung IMR-90_Nutlin-3a 232 1 18 1 0 15 145 EIF3C,EIF3CL
SE_02_005400329 chr16:28380912-28386806 Sample_02_0054 Lung IMR-90_DMSO_1 329 1 19 1 0 15 129 EIF3C,EIF3CL
SE_02_072701079 chr16:28381101-28386166 Sample_02_0727 Fetal lung IMR90_Etoposide 1079 2 18 1 0 15 121 EIF3CL,EIF3C,NPIPB6,MIR6862-1
SE_00_002300696 chr16:28381325-28385086 Sample_00_0023 Embryo mesenchymal-stem-cell 696 1 11 1 0 15 121 EIF3C,EIF3CL
SE_02_098800889 chr16:28425440-28456902 Sample_02_0988 Blood K562_EPZ 889 7 120 6 0 0 229 EIF3C,EIF3CL,IL27,APOBR,MIR6862-1,CLN3
SE_02_103600162 chr16:28660314-28750996 Sample_02_1036 Mammary gland HCC70_XY018 162 48 416 22 0 123 1620 EIF3C,EIF3CL,MIR6862-2,NPIPB8,NPIPB9,SULT1A1
SE_02_103500304 chr16:28665900-28750997 Sample_02_1035 Mammary gland HCC70_Vehicle 304 26 406 22 0 123 1620 EIF3C,EIF3CL,MIR6862-2,NPIPB8,NPIPB9,SULT1A1
SE_02_111100215 chr16:28688486-28755786 Sample_02_1111 Other HGrC1_SMAD2/3KO 215 34 407 22 0 123 1723 EIF3C,EIF3CL,MIR6862-2,NPIPB9
SE_02_104901166 chr16:28698635-28755625 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 1166 19 372 19 0 123 1614 EIF3C,EIF3CL,MIR6862-2,NPIPB9
SE_02_040300412 chr16:28710755-28751558 Sample_02_0403 Mammary gland T-47D_untreat 412 5 282 18 0 123 1494 EIF3C,EIF3CL,ATXN2L
SE_02_048102074 chr16:28710837-28751567 Sample_02_0481 Mammary gland MDA-MB231 2074 18 282 18 0 123 1494 EIF3C,EIF3CL,MIR6862-2,NPIPB9
SE_02_074700888 chr16:28711074-28750970 Sample_02_0747 Embryo ES derived ventricular cardiomyocyte_day80 888 19 282 18 0 123 1494 EIF3C,EIF3CL,MIR6862-2,NPIPB9
SE_02_037600218 chr16:28711215-28719798 Sample_02_0376 Skeletal muscle RMS237 218 3 16 1 0 45 453 EIF3C,EIF3CL,SULT1A1
SE_02_141600693 chr16:28711370-28750729 Sample_02_1416 Brain SF9402 693 9 282 18 0 123 1474 EIF3C,EIF3CL,MIR6862-2,NPIPB9
SE_02_104301149 chr16:28711506-28761531 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 1149 19 346 20 0 121 1800 EIF3C,EIF3CL,MIR6862-2,NPIPB9
SE_02_021500431 chr16:28726221-28735518 Sample_02_0215 Skin NHEK_siGRHL3 431 4 36 2 0 51 527 EIF3C,EIF3CL,ATXN2L
SE_02_011600627 chr16:28727720-28736305 Sample_02_0116 Mammary gland MDA-MB-231_untreat 627 1 41 2 0 42 413 EIF3C,EIF3CL,ATXN2L
SE_02_005400337 chr16:28728319-28734398 Sample_02_0054 Lung IMR-90_DMSO_1 337 1 32 2 0 18 129 EIF3C,EIF3CL,ATXN2L
SE_02_015100606 chr16:28728510-28751369 Sample_02_0151 Mammary gland MDA-MB-231_TA1del 606 3 233 14 0 42 413 EIF3C,EIF3CL
SE_02_099100927 chr16:28728610-28751521 Sample_02_0991 Breast cancer cell line lung metastatic variant MDA-MB-231 LM2 927 5 232 14 0 42 413 EIF3C,EIF3CL,NPIPB9
SE_02_015000699 chr16:28728797-28751352 Sample_02_0150 Mammary gland MDA-MB-231_GATA3 699 3 232 14 0 42 413 EIF3C,EIF3CL
SE_02_011200743 chr16:28728823-28744414 Sample_02_0112 Connective tissue HT1080_untreated 743 2 173 13 0 42 413 EIF3C,EIF3CL,ATXN2L
SE_02_005500233 chr16:28728994-28734509 Sample_02_0055 Lung IMR-90_Nutlin-3a 233 1 28 2 0 18 145 EIF3C,EIF3CL,ATXN2L
SE_02_028000373 chr16:28729082-28751317 Sample_02_0280 Mammary gland SUM159_DMSO_24h 373 3 230 14 0 42 413 EIF3C,EIF3CL,ATXN2L
SE_02_011300540 chr16:28729122-28733880 Sample_02_0113 Connective tissue HT1080_DOX5d 540 1 24 2 0 18 121 EIF3C,EIF3CL,ATXN2L
SE_02_111000740 chr16:28729162-28750977 Sample_02_1110 Other HGrC1 740 8 230 14 0 42 413 EIF3C,EIF3CL,NPIPB9
SE_02_072701177 chr16:28729655-28734255 Sample_02_0727 Fetal lung IMR90_Etoposide 1177 1 26 2 0 18 121 EIF3C,EIF3CL,NPIPB9
SE_02_132201041 chr16:28729783-28750989 Sample_02_1322 Connective Tissue HT1080_WT 1041 6 229 14 0 42 413 EIF3C,EIF3CL,NPIPB9
SE_02_055701154 chr16:28729970-28734606 Sample_02_0557 iPSCs WT hiPSC#1 1154 2 21 1 0 27 170 EIF3C,EIF3CL,NPIPB9
SE_02_104602569 chr16:28731804-28779184 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 2569 13 301 15 0 41 1129 EIF3C,EIF3CL,NPIPB9,ATXN2L
SE_02_104801851 chr16:28731829-28754568 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 1851 7 246 12 0 41 502 EIF3C,EIF3CL,NPIPB9
Genomic distribution of SEs associated with EIF3C
Genome Browser

The strength of the tissue affected by the gene

Expression of EIF3C

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)