SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000003249
Gene: DBNDD1 Gene type: protein_coding
Strand: - External links:
Genomic region: chr16:90004871-90019890 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_103200636 chr16:89976993-90017600 Sample_02_1032 Head and neck SCC1 JQ1 636 9 1671 233 14 83 2486 DBNDD1,AFG3L1P,CENPBD1,GAS8,URAHP,DEF8,GAS8-AS1
SE_02_039601833 chr16:89982215-90012468 Sample_02_0396 Skin NHEK-D 1833 7 1288 169 9 68 2093 AFG3L1P,DBNDD1,LOC100130015,DEF8,CENPBD1,C16ORF3,GAS8,PRDM7
SE_02_104800734 chr16:89982901-90016392 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 734 7 1413 185 12 68 2093 DBNDD1,AFG3L1P,CENPBD1,GAS8,URAHP,DEF8,GAS8-AS1
SE_02_104601455 chr16:89983301-90016776 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 1455 13 1414 184 12 69 2093 DBNDD1,AFG3L1P,CENPBD1,GAS8,URAHP,DEF8,GAS8-AS1
SE_02_104700524 chr16:89983530-90025632 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 524 22 1660 232 14 95 2541 DBNDD1,AFG3L1P,GAS8,CENPBD1,URAHP,DEF8,GAS8-AS1
SE_02_055200412 chr16:89987770-90012521 Sample_02_0552 Other SYO1 shCt 412 18 1014 118 6 61 2032 DBNDD1,AFG3L1P,CENPBD1,GAS8,URAHP,DEF8,GAS8-AS1
SE_02_143300129 chr16:89988062-90024085 Sample_02_1433 Bone A673 STAG2 null 129 18 1373 176 11 88 2480 DBNDD1,AFG3L1P,GAS8,CENPBD1,URAHP,DEF8,GAS8-AS1
SE_02_076500511 chr16:89992375-90024944 Sample_02_0765 Prostate 22RV1-DHT-DMSO_6h 511 12 1236 156 9 68 2231 DBNDD1,AFG3L1P,GAS8,CENPBD1,URAHP,DEF8,GAS8-AS1
SE_02_103000329 chr16:89992430-90024059 Sample_02_1030 Colon DKO 329 13 1209 151 9 68 2231 DBNDD1,AFG3L1P,GAS8,CENPBD1,URAHP,DEF8,GAS8-AS1
SE_02_101701503 chr16:89992431-90008307 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1503 5 670 80 3 32 1448 DBNDD1,AFG3L1P,CENPBD1,GAS8,URAHP,DEF8,GAS8-AS1
SE_02_054000155 chr16:89992495-90023788 Sample_02_0540 Brain SK-N-BE_2_-C_PI3K_engineered 155 8 1198 149 9 68 2231 DBNDD1,AFG3L1P,GAS8,CENPBD1,URAHP,DEF8,GAS8-AS1
SE_02_102900206 chr16:89992519-90024110 Sample_02_1029 Colon HCT116 206 10 1207 152 9 68 2231 DBNDD1,AFG3L1P,GAS8,CENPBD1,URAHP,DEF8,GAS8-AS1
SE_02_110500597 chr16:89992666-90024040 Sample_02_1105 Brain NBL-S 597 12 1198 151 9 68 2193 DBNDD1,AFG3L1P,GAS8,CENPBD1,URAHP,DEF8,GAS8-AS1
SE_02_127300142 chr16:89992790-90012788 Sample_02_1273 Cervix HeLa 142 5 827 93 4 41 1718 DBNDD1,AFG3L1P,CENPBD1,GAS8,URAHP,DEF8,GAS8-AS1,C16ORF3,MC1R
SE_02_111101104 chr16:89993117-90023664 Sample_02_1111 Other HGrC1_SMAD2/3KO 1104 4 1167 147 9 67 2127 DBNDD1,AFG3L1P,GAS8,CENPBD1,URAHP,DEF8,GAS8-AS1
SE_02_115900185 chr16:89993267-90025284 Sample_02_1159 Mammary gland MCF7 185 9 1207 157 9 67 2127 DBNDD1,AFG3L1P,GAS8,CENPBD1,URAHP,DEF8,GAS8-AS1,C16ORF3,LOC100130015,MC1R,TUBB3
SE_02_085200186 chr16:89993267-90025289 Sample_02_0852 Mammary gland MCF7L-P 186 8 1207 157 9 67 2127 DBNDD1,AFG3L1P,GAS8,CENPBD1,URAHP,DEF8,GAS8-AS1
SE_02_085300191 chr16:89993364-90024145 Sample_02_0853 Mammary gland MCF7L-TamR 191 11 1175 151 9 67 2127 DBNDD1,AFG3L1P,GAS8,CENPBD1,URAHP,DEF8,GAS8-AS1
SE_02_097600381 chr16:89993539-90023765 Sample_02_0976 Brain H3.3K27M-KO_DIPGXIII-c5p5-Rx_R1_cells_h3k27ac 381 3 1153 146 9 67 2127 DBNDD1,AFG3L1P,GAS8,CENPBD1,URAHP,DEF8,GAS8-AS1
SE_02_009600228 chr16:89993600-90023852 Sample_02_0096 Mammary gland ZR-75-1_1 228 4 1154 146 9 67 2124 GAS8,AFG3L1P,DBNDD1,LOC100130015,DEF8,CENPBD1,C16ORF3,PRDM7
SE_02_054300141 chr16:89993602-90023949 Sample_02_0543 Brain Kelly_vehicle 141 6 1156 148 9 67 2124 DBNDD1,AFG3L1P,GAS8,CENPBD1,URAHP,DEF8,GAS8-AS1
SE_02_087400429 chr16:89993626-90008780 Sample_02_0874 Colon HCT116_siGLIS2.2-5FU 429 4 645 78 3 31 1395 DBNDD1,AFG3L1P,CENPBD1,GAS8,URAHP,DEF8,GAS8-AS1
SE_02_087300474 chr16:89993646-90008750 Sample_02_0873 Colon HCT116_siGLIS2.1-5FU 474 6 641 78 3 31 1384 DBNDD1,AFG3L1P,CENPBD1,GAS8,URAHP,DEF8,GAS8-AS1
SE_02_054100190 chr16:89993735-90023912 Sample_02_0541 Brain Kelly_NaiveJQ1 190 7 1154 148 9 67 2105 DBNDD1,AFG3L1P,GAS8,CENPBD1,URAHP,DEF8,GAS8-AS1
SE_02_101600935 chr16:89993755-90008803 Sample_02_1016 Embryo H9_Mesendoderm_24h 935 2 643 78 3 31 1387 DBNDD1,AFG3L1P,CENPBD1,GAS8,URAHP,DEF8,GAS8-AS1
SE_02_041800081 chr16:89993783-90008884 Sample_02_0418 Embryo H9_Null+EZH2 81 2 646 79 3 32 1394 AFG3L1P,DBNDD1,LOC100130015,DEF8,CENPBD1,C16ORF3,GAS8
SE_02_074200278 chr16:89993885-90008023 Sample_02_0742 Embryo ESCs_day0 278 2 606 76 3 26 1291 DBNDD1,AFG3L1P,CENPBD1,GAS8,URAHP,DEF8,GAS8-AS1
SE_01_000200195 chr16:89994238-90005228 Sample_01_0002 Prostate 22Rv1_10nM17beta-hydroxy-5alpha-androstan-3-one 195 2 491 63 3 23 928 AFG3L1P,DBNDD1,LOC100130015,DEF8,CENPBD1,C16ORF3,GAS8
SE_02_116000712 chr16:89994272-90012265 Sample_02_1160 Embryo H1_shLuc 712 5 749 87 4 35 1598 DBNDD1,AFG3L1P,CENPBD1,GAS8,URAHP,DEF8,GAS8-AS1
SE_02_044800987 chr16:89994284-90023524 Sample_02_0448 Bone MNNG 987 3 1115 142 9 62 2046 DBNDD1,AFG3L1P,GAS8,CENPBD1,URAHP,DEF8,GAS8-AS1
SE_02_105000164 chr16:89994307-90024054 Sample_02_1050 Highly metastatic osteosarcoma MG63-3_DMSO 164 4 1130 146 9 62 2046 DBNDD1,AFG3L1P,GAS8,CENPBD1,URAHP,DEF8,GAS8-AS1
SE_02_153900710 chr16:89994329-90012402 Sample_02_1539 Nasopharyngeal C666-1 710 7 754 88 4 35 1598 DBNDD1,AFG3L1P,CENPBD1,GAS8,URAHP,DEF8,GAS8-AS1
SE_02_041700145 chr16:89994485-90008411 Sample_02_0417 Embryo H9_Null 145 2 589 75 3 26 1263 AFG3L1P,DBNDD1,LOC100130015,DEF8,CENPBD1,C16ORF3,GAS8
SE_02_087200438 chr16:89994675-90016736 Sample_02_0872 Colon HCT116_siCtrl-5FU 438 6 909 110 7 35 1569 DBNDD1,AFG3L1P,CENPBD1,GAS8,URAHP,DEF8,GAS8-AS1
SE_02_087100255 chr16:89994965-90008414 Sample_02_0871 Colon HCT116_GLIS2.2-DMSO 255 2 562 73 3 26 1197 DBNDD1,AFG3L1P,CENPBD1,GAS8,URAHP,DEF8,GAS8-AS1
SE_02_103500277 chr16:90006054-90025392 Sample_02_1035 Mammary gland HCC70_Vehicle 277 3 661 91 6 39 941 DBNDD1,GAS8,CENPBD1,AFG3L1P,URAHP,GAS8-AS1
SE_02_119301114 chr16:90016038-90023742 Sample_02_1193 Brain GBM27 1114 2 222 39 2 27 448 GAS8,DBNDD1,CENPBD1,AFG3L1P,URAHP,GAS8-AS1
SE_02_085700534 chr16:90016163-90023837 Sample_02_0857 Glioblastoma Glioblastoma neurosphere cell_HF-3035 534 2 221 38 2 27 448 GAS8,DBNDD1,CENPBD1,AFG3L1P,URAHP,GAS8-AS1
SE_02_109300584 chr16:90016666-90023908 Sample_02_1093 Mammary gland T47D_shCtrl_shRING1B_24hr 584 2 204 35 2 27 448 GAS8,DBNDD1,CENPBD1,AFG3L1P,URAHP,GAS8-AS1
SE_02_000200418 chr16:90017335-90024202 Sample_02_0002 Mammary gland MCF-7_10Gygamma_2.5h 418 1 193 33 2 26 448 GAS8,DBNDD1,LOC100130015,C16ORF3,AFG3L1P,PRDM7,CENPBD1
SE_02_077700243 chr16:90017795-90023490 Sample_02_0777 Mammary gland MCF7_TAMR 243 1 152 22 2 25 448 GAS8,DBNDD1,CENPBD1,AFG3L1P,URAHP,GAS8-AS1
SE_02_062500388 chr16:90017883-90023913 Sample_02_0625 Mammary gland WS8_4OHT 388 1 166 27 2 25 448 GAS8,DBNDD1,CENPBD1,AFG3L1P,URAHP,GAS8-AS1
SE_02_085600375 chr16:90017966-90023337 Sample_02_0856 Glioblastoma Glioblastoma neurosphere cell_HF-3016 375 1 143 21 2 24 448 GAS8,DBNDD1,CENPBD1,AFG3L1P,URAHP,GAS8-AS1
SE_02_109200669 chr16:90017986-90023678 Sample_02_1092 Mammary gland T47D_shCtrl_24hr 669 1 153 23 2 25 448 GAS8,DBNDD1,CENPBD1,AFG3L1P,URAHP,GAS8-AS1
SE_02_108600683 chr16:90018053-90023594 Sample_02_1086 Mammary gland T47D_shCtrl_0hr 683 1 150 22 2 25 448 GAS8,DBNDD1,CENPBD1,AFG3L1P,URAHP,GAS8-AS1
SE_02_109100520 chr16:90018389-90023624 Sample_02_1091 Mammary gland T47D_shCtrl_shRING1B_8hr 520 1 139 22 1 23 448 GAS8,DBNDD1,CENPBD1,AFG3L1P,URAHP,GAS8-AS1
SE_02_080100584 chr16:90018950-90023336 Sample_02_0801 Brain 2235 584 1 110 17 1 21 448 GAS8,DBNDD1,CENPBD1,AFG3L1P,URAHP,GAS8-AS1
Genomic distribution of SEs associated with DBNDD1
Genome Browser

The strength of the tissue affected by the gene

Expression of DBNDD1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)