SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000174177
Gene: CTU2 Gene type: protein_coding
Strand: + External links:
Genomic region: chr16:88706483-88715396 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_122901218 chr16:88688518-88714858 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 1218 13 1343 153 6 85 2451 RNF166,CTU2,IL17C,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059
SE_02_152900386 chr16:88688891-88707885 Sample_02_1529 Peripheral blood neutrophils_0BC75 386 1 884 93 4 57 1393 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059,IL17C,TRAPPC2L
SE_02_153000595 chr16:88689324-88709554 Sample_02_1530 Peripheral blood neutrophils_0BA0X 595 1 967 99 3 57 1393 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059,IL17C,TRAPPC2L
SE_02_025600309 chr16:88690055-88707332 Sample_02_0256 Peripheral blood MV411 309 1 823 86 2 57 1376 RNF166,CTU2,CYBA,SNAI3,MGC23284,MVD
SE_02_087400268 chr16:88691129-88708565 Sample_02_0874 Colon HCT116_siGLIS2.2-5FU 268 8 859 91 3 57 1393 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059
SE_02_153100554 chr16:88691927-88706840 Sample_02_1531 Peripheral blood neutrophils_0B9ZK 554 1 721 72 1 55 1320 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059,IL17C,TRAPPC2L
SE_02_025500662 chr16:88696939-88707386 Sample_02_0255 Haematopoietic and lymphoid tissue MOLM13 662 1 531 57 1 57 1253 RNF166,CTU2,CYBA,SNAI3,MGC23284,MVD
SE_00_000800562 chr16:88697301-88708171 Sample_00_0008 Blood CD4-positive-alpha-beta-memory-T-cell 562 1 558 63 2 54 1204 RNF166,CTU2,CYBA,SNAI3,MGC23284,MVD
SE_02_092700477 chr16:88697312-88707000 Sample_02_0927 Peripheral blood neutrophils_US 477 1 489 51 0 52 1133 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059,IL17C,TRAPPC2L
SE_01_008400539 chr16:88697474-88707374 Sample_01_0084 Spleen spleen 539 1 501 55 1 54 1152 RNF166,CTU2,CYBA,SNAI3,MGC23284,MVD
SE_02_149201064 chr16:88698360-88707669 Sample_02_1492 Peripheral blood CD34+ derived peripheral blood-derived mast cells 1064 1 472 54 2 52 1058 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059
SE_01_005200232 chr16:88698454-88707244 Sample_01_0052 Blood neutrophil 232 1 439 49 0 52 1006 RNF166,CTU2,CYBA,SNAI3,MGC23284,MVD
SE_02_083300319 chr16:88698651-88707466 Sample_02_0833 Bone marrow TEX-HIST1H3F-K27I-2-Rx_cells 319 1 445 52 1 41 986 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059
SE_00_002201149 chr16:88698703-88707242 Sample_00_0022 Lung lung_30y 1149 1 424 49 0 41 949 RNF166,CTU2,CYBA,SNAI3,MGC23284,MVD
SE_00_003900448 chr16:88698897-88707144 Sample_00_0039 Spleen spleen_3y 448 1 409 48 0 39 882 RNF166,CTU2,CYBA,SNAI3,MGC23284,MVD
SE_02_083500394 chr16:88698901-88707077 Sample_02_0835 Bone marrow TEX-HIST1H3H-K27M-Rx_cells 394 1 405 47 0 39 868 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059
SE_02_034900468 chr16:88698918-88707458 Sample_02_0349 Peripheral blood CUTLL1_dimer-mutant 468 1 430 51 1 41 919 RNF166,CTU2,CYBA,SNAI3,MGC23284,MVD
SE_02_083600541 chr16:88698964-88707270 Sample_02_0836 Bone marrow TEX-HIST1H3H-WT-Rx_cells 541 1 413 48 0 41 883 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059
SE_00_005500350 chr16:88699194-88707017 Sample_00_0055 Spleen spleen 34y 350 1 389 47 0 34 785 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059
SE_02_107000354 chr16:88699311-88713049 Sample_02_1070 Blood SupT1_WT 354 4 746 94 3 47 1401 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059
SE_02_045500743 chr16:88699339-88707171 Sample_02_0455 Th17 lymphocytes Th17-IL-10+ Day 5 743 1 387 48 0 34 799 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059
SE_02_119100770 chr16:88699343-88707270 Sample_02_1191 Brain GBM25 770 1 396 48 0 36 816 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059
SE_02_083400627 chr16:88699734-88707366 Sample_02_0834 Bone marrow TEX-HIST1H3F-WT-Rx_cells 627 1 383 51 1 29 742 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059
SE_02_081600985 chr16:88699761-88707309 Sample_02_0816 Ovary Clear cell ovarian cancer 985 1 378 47 0 29 728 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059
SE_02_083700585 chr16:88699771-88707364 Sample_02_0837 Bone marrow TEX-Luciferase-Rx_cells 585 1 380 50 1 29 732 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059
SE_02_059100150 chr16:88699922-88707277 Sample_02_0591 PBMCs adult CD4+CD25-CD45RA+CD27+ naive T cells 150 1 366 47 0 29 701 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059
SE_02_059300200 chr16:88700108-88707220 Sample_02_0593 Fetal spleenocytes fetal naive T cells 200 1 349 46 0 29 690 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059
SE_02_058100694 chr16:88700194-88707585 Sample_02_0581 Blood MOLM13_empty_HG 694 1 373 50 2 29 719 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059
SE_02_046100427 chr16:88700278-88707119 Sample_02_0461 Blood MV-4-11-B cells 427 1 340 44 0 27 673 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059
SE_02_034700355 chr16:88700330-88707778 Sample_02_0347 Blood AML11 355 1 380 50 2 29 719 RNF166,CTU2,CYBA,SNAI3,MGC23284,MVD
SE_02_048400508 chr16:88700677-88713269 Sample_02_0484 Bone marrow HSCe_23y_CD34+,CD38-,Lineage- 508 3 687 86 3 40 1368 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059
SE_00_005601030 chr16:88701135-88706913 Sample_00_0056 Sigmoid colon sigmoid colon 3y 1030 1 293 34 0 27 628 RNF166,CTU2,MIR4722,SNAI3,LOC100289580,SNAI3-AS1,MVD,LOC339059
SE_02_109800782 chr16:88701200-88707161 Sample_02_1098 Blood THP1_DMSO_noPMA 782 1 300 37 0 27 645 RNF166,CTU2,MIR4722,SNAI3,LOC100289580,SNAI3-AS1,MVD,LOC339059
SE_02_021600083 chr16:88710603-88767226 Sample_02_0216 Skin NHEK_scramble 83 13 3273 302 11 298 6881 CTU2,FAM38A,RNF166,SNAI3,MGC23284,APRT,CDT1,MVD
SE_02_010600047 chr16:88714423-88779309 Sample_02_0106 Skin NHEK_M 47 15 3596 302 14 309 6087 CTU2,FAM38A,RNF166,SNAI3,APRT,CDT1
Genomic distribution of SEs associated with CTU2
Genome Browser

The strength of the tissue affected by the gene

Expression of CTU2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)