SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000215908
Gene: CROCCP2 Gene type: transcribed_unprocessed_pseudogene
Strand: - External links:
Genomic region: chr1:16618253-16657232 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_074000186 chr1:16559945-16621446 Sample_02_0740 Muscle RH3 186 17 1196 51 2 18 3223 CROCCP2,NBPF1,MIR3675,FAM231B,MST1P2,RNU1-1
SE_02_107900037 chr1:16573956-16624369 Sample_02_1079 Muscle RMS246_PAX3-NCOA1 37 19 1105 41 2 39 2534 CROCCP2,NBPF1,MIR3675,FAM231B,MST1P2,FAM231C
SE_02_037700002 chr1:16575635-16624816 Sample_02_0377 Skeletal muscle RMS238 2 10 1066 39 2 42 2410 NBPF1,CROCCP2,MIR3675,MST1P2
SE_02_032600768 chr1:16578490-16624949 Sample_02_0326 Liver hepatocytes_d3 768 6 987 34 2 42 2247 NBPF1,CROCCP2,MIR3675,MST1P2
SE_02_032500411 chr1:16578594-16625213 Sample_02_0325 Liver hepatocytes_d1 411 6 987 34 2 42 2252 NBPF1,CROCCP2,MIR3675,MST1P2
SE_02_032700714 chr1:16578599-16624974 Sample_02_0327 Liver hepatocytes_d6 714 6 987 34 2 42 2247 NBPF1,CROCCP2,MIR3675,MST1P2
SE_02_102400073 chr1:16592058-16620976 Sample_02_1024 Prostate PC3 cells 73 11 518 14 2 17 1507 CROCCP2,NBPF1,MIR3675,MST1P2
SE_02_047401318 chr1:16592095-16623916 Sample_02_0474 Fibroblast umbilical cord Fibroblast 1318 6 556 14 2 31 1501 CROCCP2,NBPF1,FAM231C,MIR3675,MST1P2
SE_02_127500050 chr1:16592226-16624552 Sample_02_1275 Prostate PC3_Vorinostat 50 24 568 14 2 42 1490 CROCCP2,NBPF1,FAM231C,MIR3675,MST1P2
SE_01_005800470 chr1:16592427-16625200 Sample_01_0058 Prostate PC-3 470 5 575 14 2 42 1459 NBPF1,CROCCP2,MIR3675,MST1P2
SE_02_127600202 chr1:16592575-16623323 Sample_02_1276 Prostate PC3_GSK126 202 23 547 14 2 24 1454 CROCCP2,NBPF1,FAM231C,MIR3675,MST1P2
SE_02_085900190 chr1:16592896-16624884 Sample_02_0859 Prostate PC3 190 5 569 14 2 42 1454 CROCCP2,NBPF1,FAM231C,MIR3675,MST1P2
SE_02_127700102 chr1:16594599-16623193 Sample_02_1277 Prostate PC3_COMBO 102 10 524 14 2 24 1381 CROCCP2,NBPF1,FAM231C,MIR3675,MST1P2
SE_01_006900469 chr1:16596880-16624887 Sample_01_0069 Adrenal gland adrenal-gland 469 4 528 11 2 42 1318 NBPF1,CROCCP2,MIR3675,MST1P2
SE_01_008200864 chr1:16600186-16624938 Sample_01_0082 Right lobe of liver right-lobe-of-liver 864 4 472 4 0 42 1281 NBPF1,CROCCP2,MST1P2
SE_02_009600334 chr1:16600396-16624794 Sample_02_0096 Mammary gland ZR-75-1_1 334 5 466 4 0 42 1278 NBPF1,CROCCP2,MST1P2
SE_02_016800177 chr1:16600464-16625513 Sample_02_0168 Prostate LNCaP 177 4 473 4 0 42 1316 NBPF1,CROCCP2,MST1P2
SE_02_067300063 chr1:16601324-16625022 Sample_02_0673 Prostate LNCAP_FA 63 7 454 2 0 42 1179 CROCCP2,NBPF1,FAM231C,MST1P2
SE_02_076400215 chr1:16601388-16624917 Sample_02_0764 Prostate LNCaP_DHT_DMSO_6h 215 5 451 2 0 42 1173 CROCCP2,NBPF1,FAM231C,MST1P2
SE_02_106100714 chr1:16601421-16621142 Sample_02_1061 Bone TC71_WT 714 4 392 1 0 17 1171 CROCCP2,NBPF1,MST1P2
SE_02_143300781 chr1:16601503-16643506 Sample_02_1433 Bone A673 STAG2 null 781 15 764 6 0 88 2755 CROCCP2,NBPF1,FAM231C,MST1P2
SE_02_016300026 chr1:16602025-16624646 Sample_02_0163 Prostate C4-2B_SR2211_24h 26 10 437 1 0 42 1093 NBPF1,CROCCP2,MST1P2
SE_02_107800145 chr1:16602552-16639816 Sample_02_1078 Muscle RMS235_PAX3-NCOA1 145 16 687 5 0 88 2530 CROCCP2,NBPF1,FAM231C,MST1P2
SE_01_002200059 chr1:16602911-16625254 Sample_01_0022 Prostate C4-2B 59 5 427 0 0 42 1100 NBPF1,CROCCP2,MST1P2
SE_02_140700254 chr1:16602978-16624911 Sample_02_1407 Prostate LNCaP_R1881 4h 254 6 424 0 0 42 1093 CROCCP2,NBPF1,FAM231C,MST1P2
SE_02_140800320 chr1:16603009-16625219 Sample_02_1408 Prostate LNCaP_EtOH_vehicle_4h_MED19_OE 320 9 426 0 0 42 1098 CROCCP2,NBPF1,FAM231C,MST1P2
SE_02_140600227 chr1:16603034-16624945 Sample_02_1406 Prostate LNCaP_EtOH_vehicle_4h 227 7 424 0 0 42 1093 CROCCP2,NBPF1,FAM231C,MST1P2
SE_02_140900329 chr1:16603069-16624884 Sample_02_1409 Prostate LNCaP_R1881 4h_MED19_OE 329 7 423 0 0 42 1093 CROCCP2,NBPF1,FAM231C,MST1P2
SE_02_017000430 chr1:16603373-16624887 Sample_02_0170 Prostate LNCaP_R1881_DOX 430 3 419 0 0 42 1093 NBPF1,CROCCP2,MST1P2
SE_02_052600207 chr1:16603523-16624830 Sample_02_0526 Mammary gland MCF7 TRPS1 KO 207 9 416 0 0 42 1093 CROCCP2,NBPF1,FAM231C,MST1P2
SE_02_051100376 chr1:16603584-16624735 Sample_02_0511 Prostate LNCaP95_shARv7_ETOH 376 6 411 0 0 42 1093 CROCCP2,NBPF1,FAM231C,MST1P2
SE_02_066400243 chr1:16603595-16625110 Sample_02_0664 Prostate LNCaP_DMSO 243 5 415 0 0 42 1093 CROCCP2,NBPF1,FAM231C,MST1P2
SE_02_066700220 chr1:16603954-16621039 Sample_02_0667 Mammary gland MCF7_FA 220 5 344 0 0 17 1093 CROCCP2,NBPF1,MST1P2
SE_02_125300603 chr1:16606718-16625028 Sample_02_1253 Mammary gland CAMA1 ER+/FGFR1-amplified 603 6 337 0 0 42 962 CROCCP2,NBPF1,FAM231C,MST1P2
SE_02_000200391 chr1:16606887-16622481 Sample_02_0002 Mammary gland MCF-7_10Gygamma_2.5h 391 2 295 0 0 24 933 NBPF1,CROCCP2,MST1P2
SE_02_005200185 chr1:16607375-16625040 Sample_02_0052 Mammary gland MCF-7_E2 185 4 328 0 0 42 869 NBPF1,CROCCP2,MST1P2
SE_02_056600222 chr1:16607430-16626104 Sample_02_0566 Mammary gland MCF7L-P_E2_24h 222 6 345 0 0 46 1042 CROCCP2,NBPF1,FAM231C,MST1P2
SE_02_056300289 chr1:16607433-16626125 Sample_02_0563 Mammary gland MCF7L-P_0h 289 7 345 0 0 46 1049 CROCCP2,NBPF1,FAM231C,MST1P2
SE_02_056400177 chr1:16607487-16626085 Sample_02_0564 Mammary gland MCF7L-P_E2_1h 177 6 343 0 0 46 1025 CROCCP2,NBPF1,FAM231C,MST1P2
SE_00_005100578 chr1:16607490-16627775 Sample_00_0051 Adrenal gland adrenal gland 30y 578 9 366 0 0 57 1275 CROCCP2,NBPF1,FAM231C,MST1P2
SE_02_056500186 chr1:16607669-16624526 Sample_02_0565 Mammary gland MCF7L-P_E2_16h 186 6 313 0 0 42 825 CROCCP2,NBPF1,FAM231C,MST1P2
SE_02_155600367 chr1:16608442-16621159 Sample_02_1556 Gastrointestinal Stromal GIST-5_KIT e9 367 4 252 0 0 17 772 CROCCP2,NBPF1,MST1P2
SE_02_003200045 chr1:16611582-16666599 Sample_02_0032 Pancreas pancreatic-islets-M 45 9 796 13 0 105 3423 NBPF1,MST1P2,CROCCP2
SE_02_001900034 chr1:16612583-16667288 Sample_02_0019 Embryo Neural crest cells 34 12 778 13 0 105 3422 NBPF1,MST1P2,CROCCP2
SE_02_104900223 chr1:16615356-16667435 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 223 33 729 13 0 105 3161 MST1P2,RNVU1-18,CROCCP2,FAM231C,NBPF1
SE_02_041700001 chr1:16616360-16667280 Sample_02_0417 Embryo H9_Null 1 8 697 13 0 105 3161 MST1P2,CROCCP2,NBPF1
SE_02_138400742 chr1:16617115-16626146 Sample_02_1384 Other induced pluripotent stem cell derived Neuronal progenitor cell 742 6 160 0 0 46 615 CROCCP2,FAM231C,MST1P2,NBPF1
SE_02_041600004 chr1:16618305-16624862 Sample_02_0416 Embryo H9_Het 4 1 101 0 0 42 376 CROCCP2,MST1P2,NBPF1
SE_02_021400001 chr1:16618504-16658698 Sample_02_0214 Embryo H9_WT 1 5 633 13 0 105 3098 MST1P2,CROCCP2,NBPF1
SE_02_041800003 chr1:16618567-16674435 Sample_02_0418 Embryo H9_Null+EZH2 3 9 657 15 0 105 3097 MST1P2,CROCCP2,ESPNP,NBPF1
SE_02_037500036 chr1:16618606-16667273 Sample_02_0375 Skeletal muscle RMS216 36 9 639 13 0 105 3095 MST1P2,CROCCP2,NBPF1
SE_02_039600145 chr1:16618618-16667348 Sample_02_0396 Skin NHEK-D 145 11 639 13 0 105 3095 MST1P2,CROCCP2,NBPF1
SE_02_010000707 chr1:16618692-16646161 Sample_02_0100 Peripheral blood Macrophages_GM-CSF_72h 707 5 444 5 0 88 2166 MST1P2,CROCCP2,NBPF1
SE_02_037600264 chr1:16618780-16621906 Sample_02_0376 Skeletal muscle RMS237 264 2 42 0 0 19 346 CROCCP2,MST1P2,NBPF1
SE_02_087400566 chr1:16618818-16624818 Sample_02_0874 Colon HCT116_siGLIS2.2-5FU 566 4 85 0 0 42 340 CROCCP2,FAM231C,MST1P2,NBPF1
SE_02_116000114 chr1:16618904-16643295 Sample_02_1160 Embryo H1_shLuc 114 8 397 5 0 88 1904 CROCCP2,FAM231C,MST1P2,NBPF1
SE_02_012800591 chr1:16619388-16645837 Sample_02_0128 Haematopoietic and lymphoid tissue ALL-SIL 591 5 434 5 0 82 2032 MST1P2,CROCCP2,NBPF1
SE_02_138100378 chr1:16619556-16645963 Sample_02_1381 Pancreas Pancreatic cancer cells_DMSO 378 11 433 5 0 82 2006 MST1P2,CROCCP2,FAM231C,NBPF1
SE_02_155300217 chr1:16619672-16667683 Sample_02_1553 Gastrointestinal Stromal GIST-2_KIT e11 217 16 630 13 0 99 2924 MST1P2,RNVU1-18,CROCCP2,FAM231C,NBPF1
SE_02_116100167 chr1:16619706-16633496 Sample_02_1161 Embryo H1_shZNF587 167 5 226 3 0 81 1534 CROCCP2,FAM231C,MST1P2,NBPF1
SE_02_051700365 chr1:16619809-16667663 Sample_02_0517 Esophagus TE5 365 11 630 13 0 99 2885 MST1P2,RNVU1-18,CROCCP2,FAM231C,NBPF1
SE_02_103602691 chr1:16619812-16637521 Sample_02_1036 Mammary gland HCC70_XY018 2691 7 319 4 0 82 1580 CROCCP2,FAM231C,MST1P2,NBPF1
SE_02_103501826 chr1:16619830-16667263 Sample_02_1035 Mammary gland HCC70_Vehicle 1826 9 630 13 0 99 2881 MST1P2,RNVU1-18,CROCCP2,FAM231C,NBPF1
SE_02_138300433 chr1:16620301-16645880 Sample_02_1383 Pancreas Pancreatic cancer cells_THZ1 433 8 420 5 0 72 1848 MST1P2,CROCCP2,FAM231C,NBPF1
SE_02_128500037 chr1:16620649-16670057 Sample_02_1285 Lung NCI-H2171_p8-15 37 21 610 13 0 88 2741 MST1P2,RNVU1-18,CROCCP2,FAM231C,NBPF1
SE_01_009400695 chr1:16620739-16645466 Sample_01_0094 Gastrocnemius medialis gastrocnemius medialis_54y 695 6 406 5 0 71 1715 CROCCP2,FAM231C,MST1P2,NBPF1
SE_02_103900022 chr1:16621821-16667142 Sample_02_1039 Peripheral blood CD4+ CD7- cells_CTCL1043 22 11 596 13 0 86 2741 MST1P2,RNVU1-18,CROCCP2,FAM231C,NBPF1
SE_02_123700290 chr1:16622852-16639909 Sample_02_1237 Skin MKL2_virus_positive 290 2 291 4 0 64 1437 CROCCP2,FAM231C,MST1P2,NBPF1
SE_02_025700042 chr1:16622982-16718578 Sample_02_0257 Endometrioid endometrioid_adenocarcinoma_TumorA 42 14 1926 119 2 337 4079 MIR3675,MST1P2,ESPNP,CROCCP2,NBPF1,MST1P9
SE_02_036700121 chr1:16623162-16646125 Sample_02_0367 Skeletal muscle NS129 121 3 383 5 0 64 1812 MST1P2,CROCCP2,NBPF1
SE_02_146100221 chr1:16627610-16649636 Sample_02_1461 Ovary A2780_shRen 221 5 376 7 0 31 2165 MST1P2,CROCCP2,FAM231C,NBPF1
SE_01_008401148 chr1:16628121-16648461 Sample_01_0084 Spleen spleen 1148 3 351 5 0 31 1921 MST1P2,CROCCP2,NBPF1
Genomic distribution of SEs associated with CROCCP2
Genome Browser

The strength of the tissue affected by the gene

Expression of CROCCP2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)