SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000160917
Gene: CPSF4 Gene type: protein_coding
Strand: + External links:
Genomic region: chr7:99438922-99457373 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_075300165 chr7:99420325-99440622 Sample_02_0753 Embryo ES-derived progenitors_FG type 165 4 639 54 5 60 1169 CPSF4,PTCD1,ATP5J2-PTCD1,BUD31,ARPC1B,ZNF789,ATP5J2,PDAP1
SE_02_012400518 chr7:99421680-99445795 Sample_02_0124 Embryo Embryonic-stem-cells_Naive 518 3 737 67 5 61 1236 ATP5J2-PTCD1,CPSF4,PTCD1,ATP5J2,ARPC1B,PDAP1,BUD31,ZNF789
SE_02_033000663 chr7:99423082-99443099 Sample_02_0330 Endoderm MHG 663 4 598 59 5 60 1169 ATP5J2-PTCD1,CPSF4,PTCD1,ATP5J2,ARPC1B,PDAP1,BUD31,ZNF789
SE_02_103501629 chr7:99425846-99445889 Sample_02_1035 Mammary gland HCC70_Vehicle 1629 10 580 56 4 34 866 CPSF4,PTCD1,ATP5J2-PTCD1,BUD31,ATP5J2,PDAP1,ZNF789
SE_02_075700534 chr7:99427180-99445334 Sample_02_0757 Embryo ES-derived progenitors_FOXA2 -/- 534 6 526 50 4 34 866 CPSF4,PTCD1,ATP5J2-PTCD1,BUD31,ATP5J2,PDAP1,ZNF789
SE_02_032200338 chr7:99428389-99440817 Sample_02_0322 Colon Caco-2 338 1 370 29 4 33 799 ATP5J2-PTCD1,CPSF4,PTCD1,ATP5J2,ZNF789,PDAP1,BUD31
SE_02_076500087 chr7:99428904-99440655 Sample_02_0765 Prostate 22RV1-DHT-DMSO_6h 87 1 350 28 3 33 799 CPSF4,PTCD1,ATP5J2-PTCD1,BUD31,ATP5J2,PDAP1,ZNF789
SE_02_004400287 chr7:99430948-99439858 Sample_02_0044 Embryo endodermal CyT49_ES_D5 287 3 268 21 2 17 596 ATP5J2-PTCD1,CPSF4,PTCD1,ATP5J2,ZNF789,PDAP1,BUD31
SE_02_003901191 chr7:99431082-99443181 Sample_02_0039 Embryo AFG 1191 4 345 29 2 17 596 ATP5J2-PTCD1,CPSF4,PTCD1,ATP5J2,ZNF789,PDAP1,BUD31
SE_02_152700578 chr7:99431144-99445336 Sample_02_1527 Embryo naive embryonic stem cell 578 3 416 35 2 18 663 CPSF4,PTCD1,ATP5J2-PTCD1,BUD31,ATP5J2,PDAP1,ZNF789
SE_02_077400152 chr7:99431389-99440043 Sample_02_0774 Prostate 22Rv1_delSite1_Clone11/12-D8 152 3 261 21 2 17 596 CPSF4,PTCD1,ATP5J2-PTCD1,BUD31,ATP5J2,PDAP1,ZNF789
SE_01_000200106 chr7:99431431-99439754 Sample_01_0002 Prostate 22Rv1_10nM17beta-hydroxy-5alpha-androstan-3-one 106 2 256 21 2 17 589 ATP5J2-PTCD1,CPSF4,PTCD1,ATP5J2,ZNF789,PDAP1,BUD31
SE_01_000100098 chr7:99431504-99440174 Sample_01_0001 Prostate 22Rv1 98 2 260 21 2 17 596 ATP5J2-PTCD1,CPSF4,PTCD1,ATP5J2,ZNF789,PDAP1,BUD31
SE_02_077200248 chr7:99434087-99439543 Sample_02_0772 Prostate 22Rv1_delSite1_Clone11/12-F6 248 5 164 12 1 12 446 CPSF4,PTCD1,ATP5J2-PTCD1,BUD31,ATP5J2,PDAP1,ZNF789
SE_02_133200600 chr7:99441092-99479139 Sample_02_1332 Blood Monomac6_CTRL 600 7 1083 87 11 80 1379 CPSF4,ZNF789,ATP5J2-PTCD1,ATP5J2,BUD31,ZKSCAN5,PTCD1,PDAP1,ZNF394
SE_02_076500098 chr7:99451371-99476317 Sample_02_0765 Prostate 22RV1-DHT-DMSO_6h 98 1 707 59 7 56 907 CPSF4,ZNF789,ATP5J2-PTCD1,ATP5J2,BUD31,ZKSCAN5,PTCD1,PDAP1,ZNF394
SE_02_077500561 chr7:99455409-99489236 Sample_02_0775 Pancreas EndoC-BH1_SE 561 7 947 65 11 32 1280 CPSF4,ZNF789,ATP5J2-PTCD1,ATP5J2,BUD31,ZKSCAN5,PTCD1,PDAP1,ZNF394
SE_02_104603035 chr7:99455842-99479101 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 3035 4 651 47 8 30 844 CPSF4,ZNF789,ATP5J2-PTCD1,ATP5J2,BUD31,ZKSCAN5,PTCD1,PDAP1,ZNF394
SE_01_000200127 chr7:99456773-99474221 Sample_01_0002 Prostate 22Rv1_10nM17beta-hydroxy-5alpha-androstan-3-one 127 3 486 37 5 26 629 CPSF4,ATP5J2-PTCD1,ZNF789,ATP5J2,ZKSCAN5,PDAP1,ZNF394,BUD31,PTCD1
Genomic distribution of SEs associated with CPSF4
Genome Browser

The strength of the tissue affected by the gene

Expression of CPSF4

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)