SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000168090
Gene: COPS6 Gene type: protein_coding
Strand: + External links:
Genomic region: chr7:100088969-100092187 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_045300469 chr7:100078221-100096386 Sample_02_0453 Neuroblastoma SJNB3 469 1 495 51 2 118 1492 MIR106B,MCM7,COPS6,ZNF3,MIR25,MIR93,ZSCAN21,AP4M1,TAF6,MBLAC1,CNPY4
SE_02_093801269 chr7:100079302-100092209 Sample_02_0938 Retinal Pigmented Epithelial RPE190_TnT 1269 2 298 29 1 72 910 ZNF3,COPS6,MCM7,ZSCAN21,AP4M1,TAF6,MIR93,MBLAC1,CNPY4,MIR106B,MIR25
SE_02_032800381 chr7:100079890-100090106 Sample_02_0328 Embryo H9_naive 381 2 236 23 1 28 509 COPS6,ZNF3,CNPY4,MIR106B,MIR25,TAF6,MCM7,AP4M1,ZSCAN21,MIR93,MBLAC1
SE_02_063100470 chr7:100084741-100090199 Sample_02_0631 Gastrointestinal Stromal GIST-T1_JQ1 470 1 132 12 0 19 299 COPS6,MCM7,ZSCAN21,AP4M1,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,MIR106B,MIR25
SE_02_062900544 chr7:100084984-100091361 Sample_02_0629 Gastrointestinal Stromal GIST-T1_DMSO 544 2 151 15 0 47 474 COPS6,MCM7,ZSCAN21,AP4M1,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,MIR106B,MIR25
SE_02_005500643 chr7:100085305-100092233 Sample_02_0055 Lung IMR-90_Nutlin-3a 643 1 164 18 0 63 612 COPS6,CNPY4,MIR106B,MIR25,TAF6,MCM7,AP4M1,ZSCAN21,ZNF3,MIR93,MBLAC1
SE_02_005400632 chr7:100085380-100092230 Sample_02_0054 Lung IMR-90_DMSO_1 632 1 163 18 0 63 611 COPS6,CNPY4,MIR106B,MIR25,TAF6,MCM7,AP4M1,ZSCAN21,ZNF3,MIR93,MBLAC1
SE_02_044800741 chr7:100085584-100090645 Sample_02_0448 Bone MNNG 741 1 115 14 0 34 374 COPS6,MCM7,ZSCAN21,AP4M1,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,MIR106B,MIR25
SE_02_072700597 chr7:100085637-100092659 Sample_02_0727 Fetal lung IMR90_Etoposide 597 1 169 20 0 63 646 COPS6,MCM7,ZSCAN21,AP4M1,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,MIR106B,MIR25
SE_02_143301506 chr7:100085684-100089919 Sample_02_1433 Bone A673 STAG2 null 1506 1 93 12 0 19 259 COPS6,MCM7,ZSCAN21,AP4M1,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,MIR106B,MIR25
SE_02_146900589 chr7:100085764-100089659 Sample_02_1469 Umbilical Vein HUVEC 589 1 83 12 0 18 226 COPS6,MCM7,ZSCAN21,AP4M1,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,MIR106B,MIR25
SE_02_147100969 chr7:100085800-100090589 Sample_02_1471 Blood Outgrowth Endothelia BOEC 969 1 107 14 0 34 366 COPS6,MCM7,ZSCAN21,AP4M1,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,MIR106B,MIR25
SE_02_147200930 chr7:100085878-100091885 Sample_02_1472 Fetal lung IMR-90 930 2 137 16 0 63 564 COPS6,MCM7,ZSCAN21,AP4M1,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,MIR106B,MIR25
SE_02_135501049 chr7:100085915-100091110 Sample_02_1355 Umbilical cord umbilical cord-derived mesenchymal stem cells_old 1049 1 112 14 0 42 431 COPS6,MCM7,ZSCAN21,AP4M1,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,MIR106B,MIR25
SE_02_132201148 chr7:100086006-100089821 Sample_02_1322 Connective Tissue HT1080_WT 1148 1 81 12 0 19 250 COPS6,MCM7,ZSCAN21,AP4M1,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,MIR106B,MIR25
SE_02_143601484 chr7:100087432-100094186 Sample_02_1436 Liver LSEC-Ctrl 1484 1 177 25 0 88 916 MIR106B,MCM7,COPS6,MIR25,MIR93,ZSCAN21,AP4M1,ZNF3,TAF6,MBLAC1,CNPY4
Genomic distribution of SEs associated with COPS6
Genome Browser

The strength of the tissue affected by the gene

Expression of COPS6

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)