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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000092758
Gene: COL9A3 Gene type: protein_coding
Strand: + External links:
Genomic region: chr20:62816244-62841159 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_043500246 chr20:62803901-62835492 Sample_02_0435 Kidney HEK293A_WT-MEF2B_DMSO_6h 246 4 1309 137 1 108 4769 OGFR,COL9A3,C20ORF20,DPH3P1,TCFL5
SE_02_001700237 chr20:62804563-62833558 Sample_02_0017 Embryo H9_ESC 237 7 1193 128 1 108 4769 OGFR,COL9A3,C20ORF20,DPH3P1,TCFL5
SE_02_155301131 chr20:62807430-62833535 Sample_02_1553 Gastrointestinal Stromal GIST-2_KIT e11 1131 8 1113 118 1 102 4003 OGFR,COL9A3,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_127801039 chr20:62808086-62848140 Sample_02_1278 Chordoma UCH1_DMSO_48h 1039 11 1693 182 2 146 4678 OGFR,TCFL5,DPH3P1,COL9A3,OGFR-AS1,MRGBP,LINC00659
SE_02_143400880 chr20:62808522-62834617 Sample_02_1434 Trophoblast trophoblast stem cells 880 6 1122 123 1 97 3731 OGFR,COL9A3,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_103602152 chr20:62808696-62853616 Sample_02_1036 Mammary gland HCC70_XY018 2152 11 1860 202 2 147 4817 OGFR,TCFL5,DPH3P1,COL9A3,OGFR-AS1,MRGBP,LINC00659
SE_02_138500299 chr20:62809153-62852569 Sample_02_1385 Other iPSCs 299 15 1796 194 2 147 4742 OGFR,TCFL5,DPH3P1,COL9A3,OGFR-AS1,MRGBP,LINC00659
SE_02_061500740 chr20:62809395-62825037 Sample_02_0615 Liposarcoma liposarcoma cells_MLS402 740 3 657 69 1 54 2307 OGFR,COL9A3,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_098200253 chr20:62809776-62830694 Sample_02_0982 Brain H3.3K27M-KO_BT245-C2P3 253 9 887 91 1 94 3411 OGFR,COL9A3,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_001500157 chr20:62811995-62827964 Sample_02_0015 Liver HepG2_shNS 157 1 692 69 1 70 2598 OGFR,COL9A3,C20ORF20,DPH3P1,TCFL5
SE_02_010600499 chr20:62812688-62841077 Sample_02_0106 Skin NHEK_M 499 5 1298 125 2 112 3777 OGFR,COL9A3,C20ORF20,DPH3P1,TCFL5
SE_02_103900381 chr20:62812782-62831108 Sample_02_1039 Peripheral blood CD4+ CD7- cells_CTCL1043 381 5 789 78 1 79 3016 OGFR,COL9A3,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_143301046 chr20:62813705-62850706 Sample_02_1433 Bone A673 STAG2 null 1046 20 1546 165 2 129 3755 OGFR,TCFL5,DPH3P1,COL9A3,OGFR-AS1,MRGBP,LINC00659
SE_02_116000650 chr20:62813738-62836311 Sample_02_1160 Embryo H1_shLuc 650 5 974 98 1 84 3030 OGFR,COL9A3,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_085800840 chr20:62814383-62829538 Sample_02_0858 Glioblastoma Glioblastoma neurosphere cell_HF-3177 840 3 634 68 1 70 2278 COL9A3,OGFR,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_154100413 chr20:62814432-62833381 Sample_02_1541 Nasopharyngeal HNE1 413 8 802 82 1 78 2798 COL9A3,OGFR,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_127300961 chr20:62814475-62848117 Sample_02_1273 Cervix HeLa 961 12 1423 148 2 127 3636 TCFL5,COL9A3,DPH3P1,OGFR,OGFR-AS1,MRGBP,LINC00659
SE_02_018100534 chr20:62814548-62820216 Sample_02_0181 melanoma COLO679 534 1 206 23 1 21 674 COL9A3,C20ORF20,OGFR,DPH3P1,TCFL5
SE_02_040500491 chr20:62814639-62820387 Sample_02_0405 Mammary gland ZR-75-30_KO 491 3 215 22 1 21 674 COL9A3,C20ORF20,OGFR,DPH3P1,TCFL5
SE_02_018000792 chr20:62814647-62820668 Sample_02_0180 melanoma CJM 792 1 221 23 1 21 674 COL9A3,C20ORF20,OGFR,DPH3P1,TCFL5
SE_02_043600525 chr20:62814681-62835744 Sample_02_0436 Kidney HEK293A_empty-vector_DMSO_6h 525 3 902 86 1 78 2798 COL9A3,C20ORF20,OGFR,DPH3P1,TCFL5
SE_02_153900358 chr20:62814709-62834644 Sample_02_1539 Nasopharyngeal C666-1 358 6 855 85 1 78 2798 COL9A3,OGFR,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_096300705 chr20:62814749-62826458 Sample_02_0963 Brain H3.3K27M_Tumor-derived cell-line_G477p6_cells 705 4 489 45 1 43 1694 COL9A3,OGFR,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_055800503 chr20:62814789-62832581 Sample_02_0558 iPSCs FX52 iPSCs mock 503 5 749 73 1 77 2705 COL9A3,OGFR,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_052100226 chr20:62814897-62825058 Sample_02_0521 Colon SW480 226 2 412 37 1 35 1387 COL9A3,OGFR,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_095800216 chr20:62814903-62825423 Sample_02_0958 Brain H3.3K27M_Tumor_BT245-X0-2-Rx_xenograft 216 3 432 39 1 35 1455 COL9A3,OGFR,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_040600367 chr20:62814913-62824433 Sample_02_0406 Mammary gland ZR-75-30_parental 367 4 384 34 1 33 1238 COL9A3,C20ORF20,OGFR,DPH3P1,TCFL5
SE_02_057101037 chr20:62814952-62819984 Sample_02_0571 Brain LN229_1mM_glucose_5mM_acetate 1037 2 182 18 1 19 625 COL9A3,OGFR,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_097100458 chr20:62815009-62826506 Sample_02_0971 Brain H3.3K27M_XPS124018_xenograft 458 6 473 45 1 43 1694 COL9A3,OGFR,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_006400892 chr20:62815032-62833379 Sample_02_0064 Embryo DN-Early_G1 892 3 769 76 1 78 2798 COL9A3,C20ORF20,OGFR,DPH3P1,TCFL5
SE_02_079800204 chr20:62815783-62821058 Sample_02_0798 Brain 1919 204 2 186 22 1 21 688 COL9A3,OGFR,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_085600460 chr20:62815805-62820194 Sample_02_0856 Glioblastoma Glioblastoma neurosphere cell_HF-3016 460 1 154 17 1 21 674 COL9A3,OGFR,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_085700424 chr20:62815816-62821107 Sample_02_0857 Glioblastoma Glioblastoma neurosphere cell_HF-3035 424 1 187 22 1 21 703 COL9A3,OGFR,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_096200849 chr20:62815864-62820979 Sample_02_0962 Brain H3.3K27M_Tumor-derived cell-line_DIPGXIIIp11_cells 849 1 181 22 1 21 674 COL9A3,OGFR,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_117900382 chr20:62815900-62825049 Sample_02_1179 Brain GBM08 382 3 374 36 1 35 1382 COL9A3,OGFR,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_119300243 chr20:62815920-62848319 Sample_02_1193 Brain GBM27 243 4 1372 143 2 127 3636 TCFL5,COL9A3,DPH3P1,OGFR,OGFR-AS1,MRGBP,LINC00659
SE_02_080200219 chr20:62815937-62820577 Sample_02_0802 Brain 3094 219 2 166 17 1 21 674 COL9A3,OGFR,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_117300960 chr20:62816054-62821282 Sample_02_1173 Brain GBM01 960 1 189 22 1 22 752 COL9A3,OGFR,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_096600809 chr20:62816068-62832710 Sample_02_0966 Brain H3.3K27M_JN29-BS3 809 7 708 71 1 77 2705 COL9A3,OGFR,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_117600574 chr20:62816275-62832567 Sample_02_1176 Brain GBM04 574 5 699 71 1 77 2705 COL9A3,OGFR,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_101300466 chr20:62816511-62832457 Sample_02_1013 Brain Lateral temporal lobe_6T_AD 466 7 690 68 0 77 2705 COL9A3,OGFR,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_063300473 chr20:62817031-62833462 Sample_02_0633 Gastrointestinal Stromal GIST-48B_Imatinib 473 8 725 72 0 74 2730 COL9A3,OGFR,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_121200420 chr20:62817132-62825489 Sample_02_1212 Brain GBM30 420 4 373 34 0 30 1359 COL9A3,OGFR,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_006800696 chr20:62817370-62820473 Sample_02_0068 Skin A375_DMSO 696 1 138 12 0 12 522 COL9A3,C20ORF20,OGFR,DPH3P1,TCFL5
SE_02_116200464 chr20:62817551-62824779 Sample_02_1162 Stomach YCC11 464 1 335 30 0 26 1102 COL9A3,OGFR,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_114600064 chr20:62818671-62836826 Sample_02_1146 Peripheral nerve STS26T PRC2 WT 64 11 838 79 1 71 2604 COL9A3,OGFR,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_107000288 chr20:62818751-62836710 Sample_02_1070 Blood SupT1_WT 288 9 824 78 1 71 2583 COL9A3,OGFR,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_138400718 chr20:62818960-62850948 Sample_02_1384 Other induced pluripotent stem cell derived Neuronal progenitor cell 718 9 1359 140 1 113 3208 TCFL5,COL9A3,DPH3P1,OGFR,OGFR-AS1,MRGBP,LINC00659
SE_02_087400267 chr20:62819153-62836289 Sample_02_0874 Colon HCT116_siGLIS2.2-5FU 267 10 775 70 0 68 2445 COL9A3,OGFR,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_087300372 chr20:62819591-62830600 Sample_02_0873 Colon HCT116_siGLIS2.1-5FU 372 4 488 47 0 58 1994 COL9A3,OGFR,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_077501955 chr20:62821727-62848785 Sample_02_0775 Pancreas EndoC-BH1_SE 1955 11 1185 123 1 103 2748 TCFL5,COL9A3,DPH3P1,OGFR,OGFR-AS1,MRGBP,LINC00659
SE_02_073900047 chr20:62822743-62901758 Sample_02_0739 Blood Nalm6 47 18 2985 330 6 268 5470 DIDO1,DPH3P1,TCFL5,COL9A3,LINC00659,OGFR-AS1,MRGBP,GID8,OGFR
SE_02_075000424 chr20:62823082-62859364 Sample_02_0750 Lymphoma Rec-1_GSI 424 16 1484 168 1 114 2851 TCFL5,COL9A3,DPH3P1,OGFR,OGFR-AS1,MRGBP,LINC00659
SE_02_073300214 chr20:62823119-62861762 Sample_02_0733 Lymphoma L20_Mantle cell lymphoma tissue_THZ1 214 10 1558 178 2 163 3277 TCFL5,COL9A3,DPH3P1,OGFR,OGFR-AS1,MRGBP,LINC00659
SE_02_075100550 chr20:62823167-62859531 Sample_02_0751 Lymphoma Rec-1_WO 550 14 1483 168 1 119 2865 TCFL5,COL9A3,DPH3P1,OGFR,OGFR-AS1,MRGBP,LINC00659
SE_02_072900261 chr20:62824381-62859575 Sample_02_0729 Lymphoma I10_Mantle cell lymphoma tissue_THZ1 261 10 1420 161 1 119 2828 TCFL5,COL9A3,DPH3P1,OGFR,OGFR-AS1,MRGBP,LINC00659
SE_02_088500056 chr20:62824450-62899804 Sample_02_0885 Blood NALM6_2 56 15 2825 311 5 264 5406 DIDO1,DPH3P1,TCFL5,COL9A3,LINC00659,OGFR-AS1,MRGBP,GID8,OGFR
SE_02_072800430 chr20:62824458-62860300 Sample_02_0728 Lymphoma I10_Mantle cell lymphoma tissue_DMSO 430 9 1451 165 2 130 2853 TCFL5,COL9A3,DPH3P1,OGFR,OGFR-AS1,MRGBP,LINC00659
SE_02_057300189 chr20:62824469-62859603 Sample_02_0573 Blood Nalm6_1 189 9 1415 160 1 118 2809 TCFL5,COL9A3,DPH3P1,OGFR,OGFR-AS1,MRGBP,LINC00659
SE_02_073100511 chr20:62824519-62839415 Sample_02_0731 Lymphoma J4_Mantle cell lymphoma tissue_THZ1 511 4 707 64 1 66 1940 COL9A3,OGFR,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_011800187 chr20:62824859-62840083 Sample_02_0118 Haematopoietic and lymphoid tissue MINO 187 3 716 64 1 66 1865 COL9A3,C20ORF20,OGFR,DPH3P1,TCFL5
SE_02_073000724 chr20:62826298-62859753 Sample_02_0730 Lymphoma J4_Mantle cell lymphoma tissue_DMSO 724 7 1341 157 1 109 2394 TCFL5,COL9A3,DPH3P1,OGFR,OGFR-AS1,MRGBP,LINC00659
SE_02_073200393 chr20:62828625-62861710 Sample_02_0732 Lymphoma L20_Mantle cell lymphoma tissue_DMSO 393 7 1303 151 2 137 2389 TCFL5,COL9A3,DPH3P1,OGFR-AS1,MRGBP,OGFR
SE_01_002100817 chr20:62831541-62848495 Sample_01_0021 Skin bipolar-neuron 817 2 724 79 1 52 1019 DPH3P1,COL9A3,TCFL5,C20ORF20,OGFR
Genomic distribution of SEs associated with COL9A3
Genome Browser

The strength of the tissue affected by the gene

Expression of COL9A3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)