SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000108797
Gene: CNTNAP1 Gene type: protein_coding
Strand: + External links:
Genomic region: chr17:42682531-42699993 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_001700552 chr17:42669468-42683133 Sample_02_0017 Embryo H9_ESC 552 5 294 19 0 276 2161 CCR10,CNTNAP1,PLEKHH3,TUBG2
SE_01_009100378 chr17:42670245-42684582 Sample_01_0091 Uterus uterus 378 1 306 28 0 275 2113 CCR10,CNTNAP1,PLEKHH3,TUBG2
SE_01_007800634 chr17:42672745-42685085 Sample_01_0078 Heart left ventricle heart-left-ventricle 634 1 256 25 0 227 1667 CCR10,CNTNAP1,PLEKHH3,TUBG2
SE_01_008900474 chr17:42673025-42685070 Sample_01_0089 Transverse colon transverse-colon 474 1 249 22 0 227 1656 CCR10,CNTNAP1,PLEKHH3,TUBG2
SE_02_030400352 chr17:42673367-42683955 Sample_02_0304 Neuroblastoma N206 352 1 215 18 0 205 1430 CCR10,CNTNAP1,PLEKHH3,TUBG2
SE_02_031800253 chr17:42673850-42684695 Sample_02_0318 Neuroblastoma NB69 253 1 223 21 0 208 1403 CCR10,CNTNAP1,PLEKHH3,TUBG2
SE_02_032300368 chr17:42674629-42683844 Sample_02_0323 Colon RKO 368 1 189 16 0 173 1080 CCR10,CNTNAP1,PLEKHH3,TUBG2
SE_02_074600924 chr17:42677307-42699367 Sample_02_0746 Embryo ES derived primitive cardiomyocite_day15 924 4 533 41 1 253 2775 CCR10,CNTNAP1,PLEKHH3,MIR6780A,EZH1,TUBG2
SE_02_074500505 chr17:42677337-42691199 Sample_02_0745 Embryo ES derived cardiac progenitor cells_day7 505 3 321 34 0 164 1768 CCR10,CNTNAP1,PLEKHH3,MIR6780A,TUBG2
Genomic distribution of SEs associated with CNTNAP1
Genome Browser

The strength of the tissue affected by the gene

Expression of CNTNAP1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)