SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000166997
Gene: CNPY4 Gene type: protein_coding
Strand: + External links:
Genomic region: chr7:100119634-100125508 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_04_000200715 chr7:100118281-100128369 Sample_04_0002 Blood cold shocked K562 715 1 266 21 1 64 1085 TAF6,CNPY4,MBLAC1,MCM7,C7ORF43,AP4M1,STAG3,MIR106B,ZNF3,MIR93,LAMTOR4,MIR25,MIR4658,GAL3ST4,COPS6,GPC2,ZCWPW1,ZKSCAN1,C7orf43,TRIM4,MEPCE,PPP1R35
SE_02_001600616 chr7:100118425-100128969 Sample_02_0016 Blood erythroblasts 616 2 270 23 1 64 1130 CNPY4,MBLAC1,TAF6,C7ORF59,MIR25,MCM7,MIR93,GPC2,GAL3ST4,COPS6,STAG3,MIR106B,ZNF3,C7ORF43,AP4M1
SE_02_066300613 chr7:100121164-100138688 Sample_02_0663 Thyroid TT 613 2 419 51 1 43 871 CNPY4,MBLAC1,MCM7,C7ORF43,AP4M1,STAG3,MIR106B,ZNF3,TAF6,MIR93,LAMTOR4,MIR25,MIR4658,GAL3ST4,COPS6,GPC2
SE_02_115900219 chr7:100121196-100130282 Sample_02_1159 Mammary gland MCF7 219 2 233 21 1 43 871 CNPY4,MBLAC1,MCM7,C7ORF43,AP4M1,STAG3,MIR106B,ZNF3,TAF6,MIR93,LAMTOR4,MIR25,MIR4658,GAL3ST4,COPS6,GPC2
SE_02_085200218 chr7:100121198-100130279 Sample_02_0852 Mammary gland MCF7L-P 218 2 233 21 1 43 871 CNPY4,MBLAC1,MCM7,C7ORF43,AP4M1,STAG3,MIR106B,ZNF3,TAF6,MIR93,LAMTOR4,MIR25,MIR4658,GAL3ST4,COPS6,GPC2
SE_02_077500910 chr7:100121209-100141289 Sample_02_0775 Pancreas EndoC-BH1_SE 910 8 484 57 1 43 871 CNPY4,MBLAC1,MCM7,C7ORF43,AP4M1,STAG3,MIR106B,ZNF3,TAF6,MIR93,LAMTOR4,MIR25,MIR4658,GAL3ST4,COPS6,GPC2,AZGP1
SE_02_123900308 chr7:100121229-100131083 Sample_02_1239 Skin Waga_virus_positive 308 2 244 21 1 43 871 CNPY4,MBLAC1,MCM7,C7ORF43,AP4M1,STAG3,MIR106B,ZNF3,TAF6,MIR93,LAMTOR4,MIR25,MIR4658,GAL3ST4,COPS6,GPC2
SE_02_107700261 chr7:100121509-100131164 Sample_02_1077 Mammary gland MCF7_TET2KO-E2 261 3 240 20 1 43 871 CNPY4,MBLAC1,MCM7,C7ORF43,AP4M1,STAG3,MIR106B,ZNF3,TAF6,MIR93,LAMTOR4,MIR25,MIR4658,GAL3ST4,COPS6,GPC2
SE_02_109900847 chr7:100122193-100131089 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 847 3 202 15 1 43 854 CNPY4,MBLAC1,MCM7,C7ORF43,AP4M1,STAG3,MIR106B,ZNF3,TAF6,MIR93,LAMTOR4,MIR25,MIR4658,GAL3ST4,COPS6,GPC2,ZCWPW1,ZKSCAN1,C7orf43,TRIM4,MEPCE,PPP1R35,ZKSCAN5
SE_02_020500047 chr7:100123968-100158310 Sample_02_0205 Stomach Gastric_Primary_Sample_T 47 5 864 84 1 142 1947 CNPY4,MBLAC1,C7ORF59,C7ORF43,MIR25,TAF6,MCM7,MIR93,GPC2,GAL3ST4,COPS6,STAG3,MIR106B,ZNF3,AP4M1
SE_00_004900605 chr7:100124549-100154157 Sample_00_0049 Small intestine small intestine 30y 605 5 745 78 1 48 1042 CNPY4,LAMTOR4,MBLAC1,MCM7,C7ORF43,AP4M1,STAG3,MIR106B,ZNF3,TAF6,MIR93,MIR25,MIR4658,GAL3ST4,COPS6,GPC2
Genomic distribution of SEs associated with CNPY4
Genome Browser

The strength of the tissue affected by the gene

Expression of CNPY4

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)