SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000188603
Gene: CLN3 Gene type: protein_coding
Strand: - External links:
Genomic region: chr16:28474111-28495575 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_058100552 chr16:28465738-28496724 Sample_02_0581 Blood MOLM13_empty_HG 552 3 666 43 16 75 2017 CLN3,APOBR,IL27,NUPR1
SE_02_099300692 chr16:28478971-28496011 Sample_02_0993 Blood MOLM-13_empty 692 2 422 32 10 70 1452 CLN3,APOBR,IL27,NUPR1
SE_02_047800352 chr16:28479384-28497522 Sample_02_0478 Colon normal colon mucosa 352 8 489 36 14 73 1786 CLN3,APOBR,IL27,NUPR1,SULT1A2,NPIPB6,EIF3CL,NPIPB7
SE_02_047700498 chr16:28479457-28496781 Sample_02_0477 Colon intestinal epithelial organoids_139a 498 5 449 33 12 71 1619 CLN3,APOBR,IL27,NUPR1
SE_01_010901066 chr16:28479472-28496675 Sample_01_0109 Colon transverse colon_54y 1066 3 439 31 10 70 1585 CLN3,APOBR,IL27,NUPR1
SE_01_009900497 chr16:28479698-28496324 Sample_01_0099 Colon transverse colon 497 3 417 31 10 70 1473 CLN3,APOBR,IL27,NUPR1
SE_02_153000482 chr16:28486456-28503735 Sample_02_1530 Peripheral blood neutrophils_0BA0X 482 5 523 43 15 88 2133 CLN3,APOBR,IL27,NUPR1
SE_02_093000680 chr16:28487248-28505195 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 680 8 535 44 15 99 2160 CLN3,APOBR,IL27,NUPR1,SGF29
SE_02_012800552 chr16:28487327-28498059 Sample_02_0128 Haematopoietic and lymphoid tissue ALL-SIL 552 2 327 26 8 57 1394 APOB48R,CLN3,NUPR1,IL27
SE_02_045400848 chr16:28487544-28498902 Sample_02_0454 Th17 lymphocytes Th17-IL-10+ Day 0 848 3 345 28 8 55 1554 CLN3,APOBR,IL27,NUPR1
SE_02_152900528 chr16:28489072-28504369 Sample_02_1529 Peripheral blood neutrophils_0BC75 528 6 466 39 14 92 1942 CLN3,APOBR,IL27,NUPR1,SGF29
SE_02_146000841 chr16:28489682-28497273 Sample_02_1460 Blood Mutz-3 841 2 233 19 7 47 928 CLN3,APOBR,IL27,NUPR1
SE_02_108600768 chr16:28490011-28506130 Sample_02_1086 Mammary gland T47D_shCtrl_0hr 768 3 488 41 14 96 1854 CLN3,APOBR,IL27,NUPR1,SGF29
SE_02_057800543 chr16:28490300-28496973 Sample_02_0578 Blood MOLM-13_sgSIK3e4 543 2 197 14 5 46 865 CLN3,APOBR,IL27,NUPR1
SE_01_005200563 chr16:28490381-28500749 Sample_01_0052 Blood neutrophil 563 2 324 23 10 68 1580 APOB48R,CLN3,IL27,NUPR1
SE_02_057700753 chr16:28490534-28496784 Sample_02_0577 Blood MOLM13_empty 753 1 180 14 5 46 819 CLN3,APOBR,IL27,NUPR1
SE_00_000600559 chr16:28490556-28508557 Sample_00_0006 Blood CD14-positive-monocyte 559 2 525 42 16 132 1970 APOB48R,CLN3,IL27,CCDC101,NUPR1
SE_02_058200684 chr16:28490563-28496856 Sample_02_0582 Blood MOLM13_SIK3TQ_HG 684 1 181 14 5 46 838 CLN3,APOBR,IL27,NUPR1
SE_02_092800442 chr16:28490682-28498759 Sample_02_0928 Peripheral blood neutrophils_Ecoli 442 3 260 20 7 51 1279 CLN3,APOBR,IL27,NUPR1
SE_02_034300651 chr16:28490683-28497192 Sample_02_0343 Bone marrow HSPC_A0 651 1 204 16 7 47 911 APOB48R,CLN3,NUPR1,IL27
SE_02_057400816 chr16:28490764-28496443 Sample_02_0574 Blood MOLM-13_sgNeg2 816 1 157 12 3 45 736 CLN3,APOBR,IL27,NUPR1
SE_02_057500466 chr16:28490766-28496726 Sample_02_0575 Blood MOLM13_sgLKB1e2 466 1 166 12 3 45 802 CLN3,APOBR,IL27,NUPR1
SE_02_131600623 chr16:28490774-28496819 Sample_02_1316 Brain hMGLs_TREM2-R47H 623 1 175 14 5 46 830 CLN3,APOBR,IL27,NUPR1
SE_02_034200694 chr16:28490828-28497212 Sample_02_0342 Liver HSPCs_F0 694 1 203 16 7 47 917 APOB48R,CLN3,NUPR1,IL27
SE_02_135000558 chr16:28490922-28496601 Sample_02_1350 Leukophereses leukophereses_p456 558 1 162 12 3 45 773 CLN3,APOBR,IL27,NUPR1
SE_02_083501296 chr16:28490928-28497096 Sample_02_0835 Bone marrow TEX-HIST1H3H-K27M-Rx_cells 1296 1 194 15 5 46 893 CLN3,APOBR,IL27,NUPR1
SE_02_045900693 chr16:28491096-28497156 Sample_02_0459 Blood ME-1_DMSO_6h 693 1 195 15 6 46 905 CLN3,APOBR,IL27,NUPR1
SE_02_134800534 chr16:28491140-28496291 Sample_02_1348 Leukophereses leukophereses_p408 534 1 143 10 2 45 702 CLN3,APOBR,IL27,NUPR1
SE_02_045500722 chr16:28491159-28497836 Sample_02_0455 Th17 lymphocytes Th17-IL-10+ Day 5 722 2 221 17 7 48 1056 CLN3,APOBR,IL27,NUPR1
SE_02_046000692 chr16:28491174-28497087 Sample_02_0460 Blood ME-1_I-10-49_6h 692 1 189 13 5 46 892 CLN3,APOBR,IL27,NUPR1
SE_02_153100625 chr16:28491207-28500771 Sample_02_1531 Peripheral blood neutrophils_0B9ZK 625 4 309 22 10 68 1580 CLN3,APOBR,IL27,NUPR1
SE_02_131700572 chr16:28491216-28496827 Sample_02_1317 Brain hMGLs_SORL1-KO 572 2 167 13 5 46 830 CLN3,APOBR,IL27,NUPR1
SE_02_143000441 chr16:28491293-28496510 Sample_02_1430 Blood Kasumi-3_mock-infected 441 1 153 11 3 45 752 CLN3,APOBR,IL27,NUPR1
Genomic distribution of SEs associated with CLN3
Genome Browser

The strength of the tissue affected by the gene

Expression of CLN3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)