SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000188037
Gene: CLCN1 Gene type: protein_coding
Strand: + External links:
Genomic region: chr7:143316111-143352083 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_062200195 chr7:143288415-143325391 Sample_02_0622 Blood EOL1_Naive 195 16 1024 30 0 153 1769 CLCN1,CASP2,FAM131B,TMEM139,GSTK1
SE_02_034200646 chr7:143290277-143323516 Sample_02_0342 Liver HSPCs_F0 646 7 923 26 0 131 1452 CASP2,CLCN1,FAM131B,GSTK1,TMEM139
SE_02_103601731 chr7:143291886-143345933 Sample_02_1036 Mammary gland HCC70_XY018 1731 22 1509 83 1 226 2192 CLCN1,CASP2,FAM131B,TMEM139,GSTK1,ZYX,MIR6892
SE_02_046000418 chr7:143292041-143332134 Sample_02_0460 Blood ME-1_I-10-49_6h 418 12 1140 40 1 167 1724 CLCN1,CASP2,FAM131B,TMEM139,GSTK1,ZYX
SE_02_099400969 chr7:143292798-143327881 Sample_02_0994 Blood MOLM13_SIK3TQ 969 16 995 32 0 141 1433 CLCN1,CASP2,FAM131B,TMEM139,GSTK1
SE_02_127600112 chr7:143300243-143349418 Sample_02_1276 Prostate PC3_GSK126 112 25 1390 90 1 205 2164 CLCN1,CASP2,FAM131B,TMEM139,GSTK1,ZYX,MIR6892
SE_02_102400085 chr7:143301362-143341458 Sample_02_1024 Prostate PC3 cells 85 8 1126 58 1 152 1620 CLCN1,CASP2,FAM131B,TMEM139,GSTK1,ZYX,MIR6892
SE_02_127700101 chr7:143319680-143338382 Sample_02_1277 Prostate PC3_COMBO 101 21 559 38 1 80 883 CLCN1,FAM131B,TMEM139,CASP2,ZYX,MIR6892
SE_02_127400115 chr7:143320819-143338687 Sample_02_1274 Prostate PC3_DMSO 115 19 534 37 1 73 793 CLCN1,FAM131B,TMEM139,CASP2,ZYX,MIR6892
SE_02_085900337 chr7:143320927-143338040 Sample_02_0859 Prostate PC3 337 5 506 34 1 72 776 CLCN1,FAM131B,TMEM139,CASP2,ZYX,MIR6892
SE_02_077501862 chr7:143321415-143332177 Sample_02_0775 Pancreas EndoC-BH1_SE 1862 5 337 18 1 51 603 CLCN1,FAM131B,TMEM139,CASP2,ZYX
SE_02_127500474 chr7:143323855-143337586 Sample_02_1275 Prostate PC3_Vorinostat 474 16 380 30 1 58 424 CLCN1,FAM131B,TMEM139,CASP2,ZYX,MIR6892
Genomic distribution of SEs associated with CLCN1
Genome Browser

The strength of the tissue affected by the gene

Expression of CLCN1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)