SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000111666
Gene: CHPT1 Gene type: protein_coding
Strand: + External links:
Genomic region: chr12:101696947-101744140 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_01_007600029 chr12:101522473-101715031 Sample_01_0076 Gastrocnemius medialis gastrocnemius-medialis 29 18 5613 509 36 473 1892 MYBPC1,CHPT1,SPIC,SYCP3
SE_01_009400050 chr12:101551007-101714312 Sample_01_0094 Gastrocnemius medialis gastrocnemius medialis_54y 50 55 4687 487 34 448 1867 MYBPC1,CHPT1,SYCP3
SE_01_009700185 chr12:101592111-101714029 Sample_01_0097 Gastrocnemius medialis gastrocnemius medialis_53y 185 37 3410 454 30 383 1842 MYBPC1,CHPT1,SYCP3
SE_02_118700359 chr12:101664560-101713975 Sample_02_1187 Brain GBM16 359 14 1360 228 14 136 855 MYBPC1,CHPT1,SYCP3
SE_02_095300416 chr12:101665162-101713930 Sample_02_0953 Brain H3.3K27M_1840 416 6 1342 226 14 131 852 MYBPC1,CHPT1,SYCP3
SE_02_117400824 chr12:101671598-101701651 Sample_02_1174 Brain GBM02 824 13 917 178 14 100 633 MYBPC1,CHPT1,SYCP3
SE_02_089101175 chr12:101679722-101714208 Sample_02_0891 Heart left ventricle_LV1202 1175 9 934 180 13 83 436 MYBPC1,CHPT1,SYCP3
SE_02_090401560 chr12:101679829-101714400 Sample_02_0904 Heart left ventricle_DCM_LV1028 1560 7 935 179 13 83 451 MYBPC1,CHPT1,SYCP3
SE_02_088901363 chr12:101679838-101714662 Sample_02_0889 Heart left ventricle_LV1183 1363 7 944 182 13 89 467 MYBPC1,CHPT1,SYCP3
SE_02_090201067 chr12:101679933-101714213 Sample_02_0902 Heart left ventricle_LV1558 1067 9 925 178 13 83 438 MYBPC1,CHPT1,SYCP3
SE_02_141001396 chr12:101680151-101714109 Sample_02_1410 Brain GSC6 1396 5 917 177 13 78 424 MYBPC1,CHPT1,SYCP3
SE_02_119300924 chr12:101680162-101700388 Sample_02_1193 Brain GBM27 924 7 623 137 13 71 412 MYBPC1,CHPT1,SYCP3
SE_02_055500249 chr12:101683093-101713616 Sample_02_0555 Other HAP1_WT 249 4 832 163 13 57 326 MYBPC1,CHPT1,SYCP3
SE_02_108400380 chr12:101683531-101713570 Sample_02_1084 Blood KBM7-derived near haploid cells 380 6 816 162 13 57 326 MYBPC1,CHPT1,SYCP3
SE_02_017000502 chr12:101684836-101718148 Sample_02_0170 Prostate LNCaP_R1881_DOX 502 5 877 176 13 61 379 MYBPC1,CHPT1,SYCP3
SE_02_140900328 chr12:101685093-101717446 Sample_02_1409 Prostate LNCaP_R1881 4h_MED19_OE 328 6 851 171 13 61 379 MYBPC1,CHPT1,SYCP3
SE_02_140800306 chr12:101685261-101720216 Sample_02_1408 Prostate LNCaP_EtOH_vehicle_4h_MED19_OE 306 10 919 177 13 68 416 MYBPC1,CHPT1,SYCP3
SE_02_067300285 chr12:101685531-101715851 Sample_02_0673 Prostate LNCAP_FA 285 6 818 163 13 59 347 MYBPC1,CHPT1,SYCP3
SE_02_146600350 chr12:101685833-101708050 Sample_02_1466 Blood HUDEP-2_BCL11AKO 350 4 646 150 13 44 256 MYBPC1,CHPT1,SYCP3
SE_02_146800476 chr12:101685878-101718020 Sample_02_1468 Blood HUDEP-2_WT 476 7 849 171 13 52 334 MYBPC1,CHPT1,SYCP3
SE_02_076500015 chr12:101686149-101789589 Sample_02_0765 Prostate 22RV1-DHT-DMSO_6h 15 20 2561 355 22 235 2081 CHPT1,GNPTAB,SYCP3
SE_02_047800842 chr12:101689640-101720659 Sample_02_0478 Colon normal colon mucosa 842 10 780 137 10 56 381 CHPT1,SYCP3
SE_00_002000935 chr12:101689864-101716620 Sample_00_0020 Large intestine large-intestine_108d 935 5 686 128 10 46 309 CHPT1,SYCP3
SE_02_046501195 chr12:101690117-101715276 Sample_02_0465 Adipose subcutaneous adipocytes 1195 6 649 120 10 46 307 CHPT1,SYCP3
SE_02_032500930 chr12:101690209-101716101 Sample_02_0325 Liver hepatocytes_d1 930 3 664 120 10 46 307 CHPT1,SYCP3
SE_01_007900887 chr12:101690800-101714455 Sample_01_0079 Peyers patch Peyers-patch 887 4 613 111 9 36 291 CHPT1,SYCP3
SE_00_003601355 chr12:101691122-101711798 Sample_00_0036 Small intestine small-intestine_108days 1355 5 549 106 9 33 248 CHPT1,SYCP3
SE_04_000200944 chr12:101694019-101715341 Sample_04_0002 Blood cold shocked K562 944 6 519 93 9 39 307 CHPT1,SYCP3
SE_02_054501146 chr12:101694492-101708297 Sample_02_0545 Bone marrow K562 WT 1146 4 353 77 7 31 248 CHPT1,SYCP3
SE_02_016800029 chr12:101694840-101785133 Sample_02_0168 Prostate LNCaP 29 11 2165 265 15 213 2011 SYCP3,CHPT1,GNPTAB
SE_04_000101189 chr12:101694888-101708266 Sample_04_0001 Blood heat shocked K562 1189 2 338 73 7 31 248 CHPT1,SYCP3
SE_02_032601101 chr12:101695055-101716576 Sample_02_0326 Liver hepatocytes_d3 1101 4 513 90 7 39 307 CHPT1,SYCP3
SE_02_136300662 chr12:101695148-101699744 Sample_02_1363 Blood Hudep2 662 1 139 35 6 21 248 CHPT1,SYCP3
SE_02_068200273 chr12:101695202-101700793 Sample_02_0682 Blood Kasumi-1 273 1 168 40 7 24 248 CHPT1,SYCP3
SE_00_004900589 chr12:101695524-101713361 Sample_00_0049 Small intestine small intestine 30y 589 7 428 72 7 31 248 CHPT1,SYCP3
SE_02_077400009 chr12:101696133-101746507 Sample_02_0774 Prostate 22Rv1_delSite1_Clone11/12-D8 9 17 1123 151 8 111 1052 CHPT1,GNPTAB,SYCP3
SE_01_000200063 chr12:101696159-101716122 Sample_01_0002 Prostate 22Rv1_10nM17beta-hydroxy-5alpha-androstan-3-one 63 5 472 71 5 39 307 CHPT1,SYCP3
SE_02_077200015 chr12:101696296-101731072 Sample_02_0772 Prostate 22Rv1_delSite1_Clone11/12-F6 15 13 797 116 5 81 676 CHPT1,SYCP3
SE_01_000100057 chr12:101696309-101716387 Sample_01_0001 Prostate 22Rv1 57 5 474 71 3 39 307 CHPT1,SYCP3
SE_02_077300018 chr12:101696336-101715191 Sample_02_0773 Prostate 22Rv1_delSite4_Clone22/23-F8 18 9 447 66 3 39 307 CHPT1,SYCP3
Genomic distribution of SEs associated with CHPT1
Genome Browser

The strength of the tissue affected by the gene

Expression of CHPT1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)