SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000255112
Gene: CHMP1B Gene type: protein_coding
Strand: + External links:
Genomic region: chr18:11851413-11854444 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_101700297 chr18:11780217-11861675 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 297 15 2318 278 1 125 487 GNAL,CHMP1B,MPPE1
SE_02_116200236 chr18:11789411-11872892 Sample_02_1162 Stomach YCC11 236 30 2438 277 1 111 724 GNAL,CHMP1B,MPPE1
SE_02_075500041 chr18:11806100-11852332 Sample_02_0755 Embryo ES-derived progenitors_DE FOXA2 -/- 41 7 1328 171 0 60 197 GNAL,CHMP1B
SE_02_075200112 chr18:11806300-11852486 Sample_02_0752 Embryo ES-derived progenitors_DE_wild type 112 6 1330 173 0 62 205 GNAL,CHMP1B
SE_02_003800252 chr18:11806361-11867347 Sample_02_0038 Embryo DE 252 9 1773 206 0 75 640 GNAL,CHMP1B,MPPE1
SE_02_155100192 chr18:11813690-11859904 Sample_02_1551 Gastrointestinal Stromal MaMel 192 7 1346 167 0 67 487 GNAL,CHMP1B,MPPE1
SE_02_127300241 chr18:11834708-11863343 Sample_02_1273 Cervix HeLa 241 5 863 70 0 59 523 GNAL,CHMP1B,MPPE1
SE_02_058800659 chr18:11835749-11860820 Sample_02_0588 Cervix HeLa Kyoto_untreated 659 10 764 68 0 56 465 GNAL,CHMP1B,MPPE1
SE_02_058900645 chr18:11835855-11860725 Sample_02_0589 Cervix HeLa Kyoto_Luci siRNA 645 6 757 67 0 56 465 GNAL,CHMP1B,MPPE1
SE_02_032200773 chr18:11837964-11862019 Sample_02_0322 Colon Caco-2 773 3 747 65 0 56 465 GNAL,CHMP1B,MPPE1
SE_02_149300305 chr18:11839367-11860904 Sample_02_1493 Skin SK-MEL-5_DMSO_6h 305 3 671 59 0 55 465 GNAL,CHMP1B,MPPE1
SE_02_035900470 chr18:11839846-11861844 Sample_02_0359 Colon Colo741 470 3 689 60 0 55 465 GNAL,CHMP1B,MPPE1
SE_01_003701146 chr18:11839904-11862945 Sample_01_0037 Liver hepatocyte 1146 5 720 60 0 58 523 GNAL,CHMP1B,MPPE1
SE_00_002001406 chr18:11840156-11863539 Sample_00_0020 Large intestine large-intestine_108d 1406 4 728 60 0 58 523 GNAL,CHMP1B,MPPE1
SE_00_003601498 chr18:11840252-11862962 Sample_00_0036 Small intestine small-intestine_108days 1498 5 712 60 0 57 523 GNAL,CHMP1B,MPPE1
SE_02_092900436 chr18:11840253-11861148 Sample_02_0929 Mid-gestation placenta trophoblast__CytT 436 10 653 58 0 54 465 GNAL,CHMP1B,MPPE1
SE_02_043800357 chr18:11843001-11861806 Sample_02_0438 Bone HOS 357 6 578 53 0 51 465 GNAL,CHMP1B,MPPE1
SE_02_080800474 chr18:11844129-11871602 Sample_02_0808 Ovary RMG1_ARID1A KO 474 21 850 79 0 62 671 GNAL,CHMP1B,MPPE1,IMPA2
SE_02_093000982 chr18:11847522-11869480 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 982 10 665 57 0 62 671 GNAL,CHMP1B,MPPE1
SE_02_077800261 chr18:11847611-11859778 Sample_02_0778 Mammary gland MCF7_FASR 261 4 362 39 0 51 465 GNAL,CHMP1B,MPPE1
SE_02_017100211 chr18:11847677-11862706 Sample_02_0171 Lung IMR-90_proliferating 211 3 460 42 0 54 523 GNAL,CHMP1B,MPPE1
SE_02_017200501 chr18:11847685-11861023 Sample_02_0172 Lung IMR-90_quiescent 501 2 402 40 0 51 465 GNAL,CHMP1B,MPPE1
SE_01_003600319 chr18:11847797-11861476 Sample_01_0036 Cervix HeLa-S3 319 3 413 39 0 51 465 GNAL,CHMP1B,MPPE1
SE_02_048100796 chr18:11847876-11872507 Sample_02_0481 Mammary gland MDA-MB231 796 5 754 69 0 69 696 GNAL,CHMP1B,MPPE1
SE_02_125800502 chr18:11848061-11873135 Sample_02_1258 Liver Pancreatic cancer cells derived from liver metastasis 502 5 779 71 0 70 702 GNAL,CHMP1B,MPPE1
SE_02_041500118 chr18:11848184-11861311 Sample_02_0415 Stomach YCC22 118 5 398 37 0 51 465 GNAL,CHMP1B,MPPE1
SE_01_007600710 chr18:11848497-11873349 Sample_01_0076 Gastrocnemius medialis gastrocnemius-medialis 710 2 777 69 0 70 702 GNAL,CHMP1B,MPPE1
SE_01_009400568 chr18:11848516-11873229 Sample_01_0094 Gastrocnemius medialis gastrocnemius medialis_54y 568 2 769 69 0 70 702 GNAL,CHMP1B,MPPE1
SE_02_061900656 chr18:11848595-11862022 Sample_02_0619 Head and Neck HPV+ HNSCC_SCC-047 656 6 405 36 0 51 465 GNAL,CHMP1B,MPPE1
SE_03_001300817 chr18:11848618-11867666 Sample_03_0013 Lung A549 817 2 581 46 0 55 625 GNAL,CHMP1B,MPPE1
SE_01_009700482 chr18:11848741-11873174 Sample_01_0097 Gastrocnemius medialis gastrocnemius medialis_53y 482 3 765 68 0 70 702 GNAL,CHMP1B,MPPE1
SE_02_126500295 chr18:11848744-11861521 Sample_02_1265 Bone Im-GCT-4072_G34W-repair_WT_D6 295 3 390 34 0 51 465 GNAL,CHMP1B,MPPE1
SE_02_086500308 chr18:11848790-11860821 Sample_02_0865 Malignant rhaboid tumor TTC1240_SMARCB1_R377H 308 3 367 34 0 51 465 GNAL,CHMP1B,MPPE1
SE_02_150900147 chr18:11848851-11861151 Sample_02_1509 Lung H3122_LR 147 6 372 33 0 51 465 GNAL,CHMP1B,MPPE1
SE_02_156600526 chr18:11848862-11861067 Sample_02_1566 Dermal Dermal fibroblast 526 2 372 33 0 50 465 GNAL,CHMP1B,MPPE1
SE_02_017500303 chr18:11848886-11860622 Sample_02_0175 Lung IMR-90_Etoposide 303 6 358 33 0 50 465 GNAL,CHMP1B,MPPE1
SE_03_000500651 chr18:11848891-11862675 Sample_03_0005 Lung A549_dexamethasone_0.5h 651 1 425 35 0 53 523 GNAL,CHMP1B,MPPE1
SE_02_086400301 chr18:11848919-11861206 Sample_02_0864 Malignant rhaboid tumor TTC1240_SMARCB1_K364del 301 1 375 33 0 50 465 GNAL,CHMP1B,MPPE1
SE_02_086200284 chr18:11848943-11860939 Sample_02_0862 Malignant rhaboid tumor TTC1240_SMARCB1 FL 284 1 369 33 0 50 465 GNAL,CHMP1B,MPPE1
SE_02_126400300 chr18:11848962-11861210 Sample_02_1264 Bone Im-GCT-4072_G34W KO 300 2 375 33 0 50 465 GNAL,CHMP1B,MPPE1
SE_01_005800355 chr18:11848975-11861930 Sample_01_0058 Prostate PC-3 355 1 398 35 0 50 465 GNAL,CHMP1B,MPPE1
SE_02_151100249 chr18:11848986-11872646 Sample_02_1511 Lung H3122_untreated 249 6 733 65 0 69 702 GNAL,CHMP1B,MPPE1
SE_02_026801109 chr18:11849009-11862132 Sample_02_0268 Kidney A-498 1109 6 401 35 0 50 465 GNAL,CHMP1B,MPPE1
SE_02_001000825 chr18:11849013-11861452 Sample_02_0010 Kidney A-498_emptyvector 825 2 385 33 0 50 465 GNAL,CHMP1B,MPPE1
SE_01_005600446 chr18:11849032-11861127 Sample_01_0056 Bone osteoblast 446 2 370 33 0 47 465 GNAL,CHMP1B,MPPE1
SE_02_001100819 chr18:11849032-11861958 Sample_02_0011 Kidney A-498_wtVHL 819 4 398 35 0 47 465 GNAL,CHMP1B,MPPE1
SE_02_012400366 chr18:11849037-11862662 Sample_02_0124 Embryo Embryonic-stem-cells_Naive 366 2 421 35 0 50 523 GNAL,CHMP1B,MPPE1
SE_02_024200525 chr18:11849039-11862960 Sample_02_0242 Colon V481 525 2 429 35 0 50 523 GNAL,CHMP1B,MPPE1
SE_01_001200581 chr18:11849058-11860843 Sample_01_0012 Lung A549_dexamethasone_1h 581 1 366 33 0 47 465 GNAL,CHMP1B,MPPE1
SE_02_113900652 chr18:11849063-11861772 Sample_02_1139 Retinal Pigmented Epithelial RPE1-anaphase/telophase 652 2 391 34 0 47 465 GNAL,CHMP1B,MPPE1
SE_02_142600321 chr18:11849064-11859661 Sample_02_1426 Shoulder fibroblast_341 321 2 328 32 0 47 465 GNAL,CHMP1B,MPPE1
SE_02_142700447 chr18:11849066-11860552 Sample_02_1427 Shoulder fibroblast_343 447 4 353 33 0 46 465 GNAL,CHMP1B,MPPE1
SE_02_082400086 chr18:11849123-11861115 Sample_02_0824 Stomach LMSU 86 3 367 33 0 44 465 GNAL,CHMP1B,MPPE1
SE_00_003200493 chr18:11849123-11873318 Sample_00_0032 Psoas muscle psoas-muscle_30y 493 4 764 67 0 63 702 GNAL,CHMP1B,MPPE1
SE_02_074800556 chr18:11849131-11860919 Sample_02_0748 Mammary gland HCC1599_WO 556 3 364 33 0 44 465 GNAL,CHMP1B,MPPE1
SE_02_074900646 chr18:11849134-11860855 Sample_02_0749 Mammary gland HCC1599_GSI 646 3 363 33 0 44 465 GNAL,CHMP1B,MPPE1
SE_02_137400624 chr18:11849157-11860481 Sample_02_1374 Pancreas Pancreatic_tumor_associated_fibroblasts_B009B_untreated 624 4 347 32 0 44 465 GNAL,CHMP1B,MPPE1
SE_02_126600518 chr18:11849158-11860954 Sample_02_1266 Bone Im-GCT-4072_G34W-repair_WT_E3 518 3 362 32 0 44 465 GNAL,CHMP1B,MPPE1
SE_00_000700578 chr18:11849164-11853987 Sample_00_0007 Blood naive thymus-derived CD4-positive,alpha-beta T cell 578 1 163 13 0 39 298 GNAL,CHMP1B
SE_02_066000838 chr18:11849165-11861213 Sample_02_0660 Mammary gland MCF10DCIS 838 2 369 32 0 44 465 GNAL,CHMP1B,MPPE1
SE_02_088400717 chr18:11849167-11862382 Sample_02_0884 Colon LoVo 717 2 408 34 0 45 494 GNAL,CHMP1B,MPPE1
SE_02_047400511 chr18:11849170-11860968 Sample_02_0474 Fibroblast umbilical cord Fibroblast 511 2 362 32 0 44 465 GNAL,CHMP1B,MPPE1
SE_02_137800415 chr18:11849171-11861648 Sample_02_1378 Pancreas Pancreatic_tumor_associated_fibroblasts_CAF08_untreated 415 5 383 33 0 44 465 GNAL,CHMP1B,MPPE1
SE_02_116600631 chr18:11849184-11862162 Sample_02_1166 Biliary H69_TGF beta_16h_1 631 5 397 34 0 44 465 GNAL,CHMP1B,MPPE1
SE_02_066100519 chr18:11849186-11860705 Sample_02_0661 Mammary gland MCF10DCIS-TetTCF7 519 5 352 32 0 44 465 GNAL,CHMP1B,MPPE1
SE_02_126700214 chr18:11849192-11861019 Sample_02_1267 Bone Im-GCT-4072_G34W 214 2 363 32 0 44 465 GNAL,CHMP1B,MPPE1
SE_02_113600650 chr18:11849197-11860824 Sample_02_1136 Bone U2OS-anaphase/telophase 650 2 358 32 0 44 465 GNAL,CHMP1B,MPPE1
SE_02_138000251 chr18:11849197-11861425 Sample_02_1380 Pancreas Pancreatic_tumor_associated_fibroblasts_CW1_untreated 251 7 378 32 0 44 465 GNAL,CHMP1B,MPPE1
SE_02_147500613 chr18:11849207-11863478 Sample_02_1475 Bone CHLA-25 613 1 434 34 0 47 523 GNAL,CHMP1B,MPPE1
SE_01_001800360 chr18:11849210-11861112 Sample_01_0018 Submandibular Salivary Gland ACC112 360 2 364 32 0 44 465 GNAL,CHMP1B,MPPE1
SE_02_086600317 chr18:11849216-11860951 Sample_02_0866 Malignant rhaboid tumor TTC1240_SMARCB1_delCC 317 1 361 32 0 44 465 GNAL,CHMP1B,MPPE1
SE_02_116900630 chr18:11849216-11862143 Sample_02_1169 Biliary H69_TGF beta_16h_2 630 3 396 34 0 44 465 GNAL,CHMP1B,MPPE1
SE_02_142100129 chr18:11849225-11859938 Sample_02_1421 Brain NHA 129 3 328 31 0 44 465 GNAL,CHMP1B,MPPE1
SE_02_021101134 chr18:11849256-11862696 Sample_02_0211 Lung MRC-5_NFD_1DPT 1134 4 413 33 0 47 523 GNAL,CHMP1B,MPPE1
SE_02_071301111 chr18:11849260-11872558 Sample_02_0713 Pancreas BxPC3_sgTP63 1111 5 718 63 0 62 699 GNAL,CHMP1B,MPPE1
SE_02_147200518 chr18:11849266-11860425 Sample_02_1472 Fetal lung IMR-90 518 3 339 30 0 44 465 GNAL,CHMP1B,MPPE1
SE_02_137600767 chr18:11849274-11861025 Sample_02_1376 Pancreas Pancreatic_tumor_associated_fibroblasts_B011C_untreated 767 3 357 31 0 44 465 GNAL,CHMP1B,MPPE1
SE_02_105200265 chr18:11849288-11861049 Sample_02_1052 Esophagus JH-EsoAd1 265 4 358 31 0 44 465 GNAL,CHMP1B,MPPE1
SE_02_137700455 chr18:11849288-11861729 Sample_02_1377 Pancreas Pancreatic_tumor_associated_fibroblasts_BF1_untreated 455 6 379 32 0 44 465 GNAL,CHMP1B,MPPE1
SE_02_009900313 chr18:11849296-11861113 Sample_02_0099 Foreskin Epidermal-Stem-Cells_shDNMT3B 313 3 358 31 0 44 465 GNAL,CHMP1B,MPPE1
SE_01_004500163 chr18:11849308-11861140 Sample_01_0045 Mammary gland mammary-epithelial-cell 163 2 358 31 0 44 465 GNAL,CHMP1B,MPPE1
SE_02_126900683 chr18:11849310-11860551 Sample_02_1269 Bone Im-GCT-4072_G34W-repair_WT_A4 683 2 341 31 0 44 465 GNAL,CHMP1B,MPPE1
SE_02_116801139 chr18:11849318-11861774 Sample_02_1168 Biliary H69_TGF Vehicle_2 1139 4 379 32 0 44 465 GNAL,CHMP1B,MPPE1
SE_02_136700546 chr18:11849323-11873188 Sample_02_1367 Pancreas Capan1-untreated 546 8 748 64 0 63 702 GNAL,CHMP1B,MPPE1
SE_02_076601228 chr18:11849328-11861048 Sample_02_0766 Ovary PEO1 1228 6 357 30 0 44 465 GNAL,CHMP1B,MPPE1,IMPA2
SE_02_007300503 chr18:11849336-11860954 Sample_02_0073 Other 90-8TL_DMSO 503 5 354 30 0 44 465 GNAL,CHMP1B,MPPE1
SE_01_001900335 chr18:11849337-11861092 Sample_01_0019 Brain and spinal cord astrocyte 335 3 357 30 0 44 465 GNAL,CHMP1B,MPPE1
SE_02_047500576 chr18:11849337-11861162 Sample_02_0475 Induced hepatocyte-like cells hepatocyte-like cells 576 2 359 30 0 44 465 GNAL,CHMP1B,MPPE1
SE_02_002100430 chr18:11849359-11861401 Sample_02_0021 Colon V429 430 2 369 30 0 44 465 GNAL,CHMP1B,MPPE1
SE_02_126200109 chr18:11849385-11860892 Sample_02_1262 Bone Im-GCT-3504_G34W 109 3 354 30 0 44 465 GNAL,CHMP1B,MPPE1
SE_02_016700640 chr18:11849387-11861071 Sample_02_0167 Mammary gland HCC1954_LCC2 640 3 357 30 0 44 465 GNAL,CHMP1B,MPPE1
SE_02_125900629 chr18:11849537-11860588 Sample_02_1259 Bone Im-GCT-3504_G34W-repair_WT_4C7 629 4 337 30 0 44 465 GNAL,CHMP1B,MPPE1
SE_03_000100126 chr18:11849538-11861118 Sample_03_0001 Foreskin foreskin-keratinocyte 126 2 353 30 0 44 465 GNAL,CHMP1B,MPPE1
SE_02_135100639 chr18:11849554-11860848 Sample_02_1351 Mammary gland MDA-MB-231-Erbeta_vehicle 639 2 348 30 0 44 465 GNAL,CHMP1B,MPPE1
SE_03_000200081 chr18:11849560-11861080 Sample_03_0002 Foreskin foreskin-keratinocyte-calcium2.5day 81 2 352 30 0 44 465 GNAL,CHMP1B,MPPE1
SE_02_145100142 chr18:11849565-11860620 Sample_02_1451 Arter pulmonary arterial smooth muscle cells_PAH1_sictrl 142 2 338 30 0 44 465 GNAL,CHMP1B,MPPE1
SE_02_145200292 chr18:11849575-11860469 Sample_02_1452 Arter pulmonary arterial smooth muscle cells_PAH2_sictrl 292 2 334 30 0 44 465 GNAL,CHMP1B,MPPE1
SE_01_004100407 chr18:11849579-11860880 Sample_01_0041 Skin keratinocyte 407 2 348 30 0 44 465 GNAL,CHMP1B,MPPE1
SE_02_145400165 chr18:11849585-11860599 Sample_02_1454 Arter pulmonary arterial smooth muscle cells_PAH1_sialdh1a3 165 3 336 30 0 44 465 GNAL,CHMP1B,MPPE1
SE_03_000300102 chr18:11849594-11861181 Sample_03_0003 Foreskin foreskin-keratinocyte-calcium5.5day 102 2 355 30 0 44 465 GNAL,CHMP1B,MPPE1
SE_00_003300350 chr18:11849643-11861967 Sample_00_0033 Psoas muscle psoas-muscle_3y 350 3 380 32 0 44 465 GNAL,CHMP1B,MPPE1
SE_02_126300750 chr18:11849657-11860974 Sample_02_1263 Bone Im-GCT-4072_G34W unedited 750 2 348 30 0 44 465 GNAL,CHMP1B,MPPE1
SE_02_145500696 chr18:11849670-11853579 Sample_02_1455 Arter pulmonary arterial smooth muscle cells_PAH2_sialdh1a3 696 1 138 9 0 39 255 GNAL,CHMP1B
SE_02_071201413 chr18:11849750-11860901 Sample_02_0712 Pancreas BxPC3_sgNEG 1413 3 344 30 0 44 465 GNAL,CHMP1B,MPPE1
SE_02_023600436 chr18:11849787-11860896 Sample_02_0236 Colon V206 436 5 342 30 0 44 465 GNAL,CHMP1B,MPPE1
SE_02_009300513 chr18:11849856-11859049 Sample_02_0093 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_Control_cycle_6 513 3 281 28 0 43 465 GNAL,CHMP1B,MPPE1
SE_02_009700228 chr18:11849872-11860901 Sample_02_0097 Foreskin Epidermal-Stem-Cells_shCTRL 228 3 339 30 0 44 465 GNAL,CHMP1B,MPPE1
SE_02_006400924 chr18:11850072-11858383 Sample_02_0064 Embryo DN-Early_G1 924 2 261 25 0 43 465 GNAL,CHMP1B
SE_02_070500606 chr18:11850168-11886076 Sample_02_0705 Pancreas AsPC1 WT 606 4 1252 88 0 86 1334 GNAL,MPPE1,CHMP1B
SE_02_076000671 chr18:11850217-11861118 Sample_02_0760 Ovary BIN-67_SMARCA4 671 2 329 30 0 44 465 GNAL,CHMP1B,MPPE1
SE_02_066600247 chr18:11850220-11861121 Sample_02_0666 Prostate RWPE1 Lacz rep1 247 4 329 30 0 44 465 GNAL,CHMP1B,MPPE1
SE_02_071100708 chr18:11850257-11860598 Sample_02_0711 Pancreas hN35_organoid 708 3 312 30 0 44 465 GNAL,CHMP1B,MPPE1
SE_02_103700514 chr18:11850279-11861692 Sample_02_1037 Pharynx FaDu Control 514 3 348 31 0 44 465 GNAL,CHMP1B,MPPE1
SE_02_104602064 chr18:11853777-11900372 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 2064 10 1575 139 1 65 1501 GNAL,MPPE1,CHMP1B
Genomic distribution of SEs associated with CHMP1B
Genome Browser

The strength of the tissue affected by the gene

Expression of CHMP1B

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)