SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000176749
Gene: CDK5R1 Gene type: protein_coding
Strand: + External links:
Genomic region: chr17:32486993-32491253 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_104700106 chr17:32435512-32544234 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 106 41 2899 165 9 369 2471 CDK5R1,PSMD11,MYO1D
SE_02_104900259 chr17:32449210-32528929 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 259 51 2141 134 7 308 2290 CDK5R1,PSMD11,MYO1D
SE_02_058600153 chr17:32470180-32555807 Sample_02_0586 Chordal patient-derived chordoma MGH_4 153 21 2440 145 10 296 2117 CDK5R1,PSMD11,MYO1D
SE_02_104601427 chr17:32472070-32529964 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 1427 15 1639 106 6 253 2117 CDK5R1,PSMD11,MYO1D
SE_02_002200358 chr17:32479005-32520809 Sample_02_0022 Blood CD8donorA 358 12 1163 88 5 231 1946 MYO1D,PSMD11,CDK5R1
SE_02_104800281 chr17:32479374-32533763 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 281 26 1557 102 5 233 1906 CDK5R1,PSMD11,MYO1D
SE_02_085701034 chr17:32480299-32529938 Sample_02_0857 Glioblastoma Glioblastoma neurosphere cell_HF-3035 1034 8 1436 100 5 221 1780 CDK5R1,PSMD11,MYO1D
SE_02_096300559 chr17:32480998-32520938 Sample_02_0963 Brain H3.3K27M_Tumor-derived cell-line_G477p6_cells 559 9 1125 88 5 198 1689 CDK5R1,PSMD11,MYO1D
SE_02_119300825 chr17:32481028-32521031 Sample_02_1193 Brain GBM27 825 9 1127 89 5 197 1688 CDK5R1,PSMD11,MYO1D
SE_02_117300833 chr17:32481068-32520738 Sample_02_1173 Brain GBM01 833 17 1117 88 5 197 1677 CDK5R1,PSMD11,MYO1D
SE_02_032000103 chr17:32481274-32529734 Sample_02_0320 Peripheral blood MO1043_ICN1_HA_H3K27Ac_a 103 4 1410 100 5 188 1649 MYO1D,CDK5R1,PSMD11
SE_02_023400398 chr17:32481291-32559424 Sample_02_0234 Tonsil Th17 398 16 2255 138 9 237 1643 MYO1D,CDK5R1,PSMD11
SE_02_006000456 chr17:32481348-32520531 Sample_02_0060 Haematopoietic and lymphoid tissue blood WT-11bp/Jurkat 456 6 1111 88 5 179 1630 MYO1D,CDK5R1,PSMD11
SE_02_120500873 chr17:32481546-32522564 Sample_02_1205 Brain NB3 873 21 1163 89 5 178 1601 CDK5R1,PSMD11,MYO1D
SE_02_095600696 chr17:32481666-32505440 Sample_02_0956 Brain IDH1_2658 696 7 703 49 5 132 1577 CDK5R1,PSMD11,MYO1D
SE_02_156000190 chr17:32481823-32592047 Sample_02_1560 Gastrointestinal Stromal GIST-9_PDGFRA e18 190 21 3127 202 17 295 1557 CDK5R1,PSMD11,MYO1D
SE_02_032100084 chr17:32481890-32529094 Sample_02_0321 Peripheral blood MO1043_ICN1_HA_H3K27Ac_b 84 4 1382 100 5 185 1545 MYO1D,CDK5R1,PSMD11
SE_02_078400079 chr17:32482200-32526047 Sample_02_0784 Blood OSU-CLL 79 10 1286 96 5 181 1521 CDK5R1,PSMD11,MYO1D
SE_02_027500188 chr17:32482340-32521899 Sample_02_0275 Retina FW14 188 5 1125 89 5 171 1508 MYO1D,CDK5R1,PSMD11
SE_02_027700195 chr17:32482342-32521626 Sample_02_0277 Retina FW18 195 4 1119 89 5 171 1508 MYO1D,CDK5R1,PSMD11
SE_01_008400352 chr17:32482379-32529851 Sample_01_0084 Spleen spleen 352 9 1390 100 5 179 1506 MYO1D,CDK5R1,PSMD11
SE_02_101700347 chr17:32482402-32579187 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 347 18 2775 184 15 251 1503 CDK5R1,PSMD11,MYO1D
SE_02_095500363 chr17:32482422-32494784 Sample_02_0955 Brain IDH1_2469 363 2 318 21 3 98 1436 CDK5R1,PSMD11,MYO1D
SE_02_104000360 chr17:32482435-32520383 Sample_02_1040 Peripheral blood CD4+ cells_CTCL1126 360 10 1084 88 5 171 1500 CDK5R1,PSMD11,MYO1D
SE_02_104200213 chr17:32482467-32520720 Sample_02_1042 Peripheral blood CD4+ cells_CTCL1137 213 13 1090 87 4 171 1495 CDK5R1,PSMD11,MYO1D
SE_02_044500613 chr17:32482477-32551710 Sample_02_0445 Lung lung metastasis from primary osteosarcoma tumor M10 613 20 2007 130 7 219 1493 CDK5R1,PSMD11,MYO1D
SE_02_121300934 chr17:32482542-32521823 Sample_02_1213 Brain GBM31 934 15 1119 88 4 171 1479 CDK5R1,PSMD11,MYO1D
SE_02_120400824 chr17:32482599-32521206 Sample_02_1204 Brain NB2 824 10 1101 88 4 171 1472 CDK5R1,PSMD11,MYO1D
SE_02_101300556 chr17:32482619-32496070 Sample_02_1013 Brain Lateral temporal lobe_6T_AD 556 7 373 31 2 109 1469 CDK5R1,PSMD11,MYO1D
SE_02_120300848 chr17:32482736-32527422 Sample_02_1203 Brain NB1 848 17 1324 97 4 179 1461 CDK5R1,PSMD11,MYO1D
SE_02_096900537 chr17:32482768-32505300 Sample_02_0969 Brain H3.3K27M_PL637 537 7 681 48 4 125 1458 CDK5R1,PSMD11,MYO1D
SE_00_000900693 chr17:32482846-32529372 Sample_00_0009 Blood CD8-positive-alpha-beta-T-cell 693 7 1374 99 4 179 1436 MYO1D,CDK5R1,PSMD11
SE_02_108300991 chr17:32482897-32531143 Sample_02_1083 Macula macula 991 12 1405 99 4 179 1433 CDK5R1,PSMD11,MYO1D
SE_02_078300102 chr17:32482909-32529992 Sample_02_0783 Blood MEC2 102 16 1383 99 4 179 1433 CDK5R1,PSMD11,MYO1D
SE_02_061100366 chr17:32482964-32525880 Sample_02_0611 Liposarcoma DDLPS_T1 366 14 1263 95 4 177 1432 CDK5R1,PSMD11,MYO1D
SE_02_108200964 chr17:32483025-32504644 Sample_02_1082 Retina retina 964 8 643 48 4 125 1424 CDK5R1,PSMD11,MYO1D
SE_02_096600753 chr17:32483025-32505395 Sample_02_0966 Brain H3.3K27M_JN29-BS3 753 3 674 48 4 125 1424 CDK5R1,PSMD11,MYO1D
SE_02_023300627 chr17:32483061-32533834 Sample_02_0233 Tonsil Th1 627 12 1483 101 4 182 1417 MYO1D,CDK5R1,PSMD11
SE_02_117900602 chr17:32483063-32505219 Sample_02_1179 Brain GBM08 602 7 670 48 4 125 1416 CDK5R1,PSMD11,MYO1D
SE_02_044401001 chr17:32483075-32529047 Sample_02_0444 Bone osteosarcoma tumor P10 1001 15 1362 99 4 179 1416 CDK5R1,PSMD11,MYO1D
SE_02_037200063 chr17:32483107-32533872 Sample_02_0372 Skeletal muscle RMS008 63 9 1482 101 4 182 1411 MYO1D,CDK5R1,PSMD11
SE_02_155900616 chr17:32483255-32520375 Sample_02_1559 Gastrointestinal Stromal GIST-8_PDGFRA e18 616 12 1067 87 4 171 1401 CDK5R1,PSMD11,MYO1D
SE_02_121200780 chr17:32483273-32520520 Sample_02_1212 Brain GBM30 780 8 1072 87 4 171 1397 CDK5R1,PSMD11,MYO1D
SE_01_011500303 chr17:32483318-32527413 Sample_01_0115 Skeletal Muscle myotube originated from skeletal muscle myoblast 303 12 1311 97 4 179 1397 CDK5R1,PSMD11,MYO1D
SE_02_039600798 chr17:32483330-32505539 Sample_02_0396 Skin NHEK-D 798 7 675 48 4 125 1393 MYO1D,CDK5R1,PSMD11
SE_02_078200060 chr17:32483340-32530049 Sample_02_0782 Blood MEC1 60 16 1377 99 4 179 1393 CDK5R1,MYO1D,PSMD11
SE_02_059100252 chr17:32483343-32520750 Sample_02_0591 PBMCs adult CD4+CD25-CD45RA+CD27+ naive T cells 252 10 1075 87 4 171 1393 CDK5R1,MYO1D,PSMD11
SE_00_005500509 chr17:32483347-32524577 Sample_00_0055 Spleen spleen 34y 509 14 1203 93 4 173 1393 CDK5R1,MYO1D,PSMD11,C17orf75
SE_02_118400408 chr17:32483354-32523359 Sample_02_1184 Brain GBM13 408 13 1164 91 4 171 1393 CDK5R1,MYO1D,PSMD11
SE_02_118701010 chr17:32483367-32523475 Sample_02_1187 Brain GBM16 1010 9 1169 93 4 171 1391 CDK5R1,MYO1D,PSMD11
SE_02_002300562 chr17:32483380-32506509 Sample_02_0023 Blood CD8donorC 562 8 703 52 4 125 1390 MYO1D,CDK5R1,PSMD11
SE_02_104300513 chr17:32483385-32528345 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 513 27 1333 98 4 179 1390 CDK5R1,MYO1D,PSMD11
SE_02_095800239 chr17:32483390-32548378 Sample_02_0958 Brain H3.3K27M_Tumor_BT245-X0-2-Rx_xenograft 239 18 1883 124 5 217 1390 CDK5R1,MYO1D,PSMD11
SE_02_100900287 chr17:32483397-32505288 Sample_02_1009 Brain Lateral temporal lobe_2T_AD 287 5 665 48 4 125 1389 CDK5R1,MYO1D,PSMD11
SE_02_101400147 chr17:32483398-32496838 Sample_02_1014 Brain Lateral temporal lobe_7T_AD 147 3 387 33 2 117 1389 CDK5R1,MYO1D,PSMD11
SE_02_107800328 chr17:32483398-32534521 Sample_02_1078 Muscle RMS235_PAX3-NCOA1 328 14 1491 101 4 182 1389 CDK5R1,MYO1D,PSMD11
SE_02_104400060 chr17:32483407-32528862 Sample_02_1044 Peripheral blood CD4+ cells_CTCL409 60 14 1350 99 4 179 1388 CDK5R1,MYO1D,PSMD11
SE_02_100600175 chr17:32483414-32495363 Sample_02_1006 Brain Lateral temporal lobe_13T_Old 175 4 319 22 2 108 1387 CDK5R1,MYO1D,PSMD11
SE_02_005800503 chr17:32483431-32520102 Sample_02_0058 Haematopoietic and lymphoid tissue blood WT/Jurkat-11bp 503 5 1059 86 4 170 1385 MYO1D,CDK5R1,PSMD11
SE_02_155300349 chr17:32483433-32523183 Sample_02_1553 Gastrointestinal Stromal GIST-2_KIT e11 349 23 1160 91 4 171 1384 CDK5R1,MYO1D,PSMD11
SE_02_088601482 chr17:32483470-32520854 Sample_02_0886 Skin foreskin_ p63KLF4 1482 8 1076 87 4 171 1373 CDK5R1,MYO1D,PSMD11
SE_02_034800576 chr17:32483487-32520443 Sample_02_0348 Peripheral blood CUTLL1_wild-type 576 7 1066 87 4 171 1367 MYO1D,CDK5R1,PSMD11
SE_02_118200304 chr17:32483584-32529465 Sample_02_1182 Brain GBM11 304 13 1359 99 4 179 1365 CDK5R1,MYO1D,PSMD11
SE_02_097000104 chr17:32483587-32551770 Sample_02_0970 Brain H3.3K27M_XHSJ019-X1-1-Rx_xenograft 104 28 1989 131 7 219 1365 CDK5R1,MYO1D,PSMD11
SE_02_096200378 chr17:32483688-32505563 Sample_02_0962 Brain H3.3K27M_Tumor-derived cell-line_DIPGXIIIp11_cells 378 7 665 48 4 122 1365 CDK5R1,MYO1D,PSMD11
SE_02_018400026 chr17:32483695-32538083 Sample_02_0184 Skin SKMEL30 26 12 1596 111 4 197 1365 MYO1D,CDK5R1,PSMD11
SE_02_045400517 chr17:32483749-32537815 Sample_02_0454 Th17 lymphocytes Th17-IL-10+ Day 0 517 11 1589 110 4 197 1365 CDK5R1,MYO1D,PSMD11
SE_02_142900547 chr17:32483784-32537280 Sample_02_1429 Blood GM12878_WT 547 9 1572 109 4 195 1365 CDK5R1,MYO1D,PSMD11,ZNF207,C17orf75,UTP6
SE_00_005601201 chr17:32484074-32524551 Sample_00_0056 Sigmoid colon sigmoid colon 3y 1201 10 1184 93 4 168 1365 CDK5R1,MYO1D,PSMD11
SE_02_100500284 chr17:32484132-32495741 Sample_02_1005 Brain Lateral temporal lobe_11T_Old 284 2 321 28 2 103 1365 CDK5R1,MYO1D,PSMD11
SE_02_101100231 chr17:32484148-32495021 Sample_02_1011 Brain Lateral temporal lobe_5T_AD 231 2 289 22 2 103 1343 CDK5R1,MYO1D,PSMD11
SE_02_013200631 chr17:32485758-32534027 Sample_02_0132 Lung 1015_CL 631 6 1427 101 4 177 1365 MYO1D,CDK5R1,PSMD11
SE_02_044100016 chr17:32485832-32525809 Sample_02_0441 Bone M112 16 21 1200 93 3 172 1365 CDK5R1,MYO1D,PSMD11
SE_02_012000021 chr17:32486107-32525787 Sample_02_0120 Haematopoietic and lymphoid tissue REC-1 21 3 1191 93 3 172 1365 MYO1D,CDK5R1,PSMD11
SE_02_149300296 chr17:32487057-32538044 Sample_02_1493 Skin SK-MEL-5_DMSO_6h 296 10 1516 106 3 190 1324 CDK5R1,MYO1D,PSMD11
SE_02_013100826 chr17:32487062-32526238 Sample_02_0131 Lung 1015_PT 826 6 1185 90 3 167 1321 MYO1D,CDK5R1,PSMD11
SE_02_018500368 chr17:32487077-32498449 Sample_02_0185 Skin UACC257 368 2 360 31 1 107 1314 MYO1D,CDK5R1,PSMD11
SE_02_028800409 chr17:32487146-32525335 Sample_02_0288 Tonsil CB5_H3K27Ac 409 6 1150 90 3 161 1296 MYO1D,CDK5R1,PSMD11
SE_02_096100022 chr17:32488147-32551389 Sample_02_0961 Brain H3.3K27M_Tumor-derived cell-line_DIPGVI_c27_cells 22 14 1876 124 6 167 1035 CDK5R1,MYO1D,PSMD11
SE_02_043900088 chr17:32488635-32525642 Sample_02_0439 Bone Hu09 88 16 1133 89 3 115 966 CDK5R1,MYO1D,PSMD11
SE_02_076201640 chr17:32488725-32570059 Sample_02_0762 Podocyte podocyte_CTL 1640 12 2408 163 12 185 949 CDK5R1,MYO1D,PSMD11
Genomic distribution of SEs associated with CDK5R1
Genome Browser

The strength of the tissue affected by the gene

Expression of CDK5R1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)