SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000188959
Gene: C9ORF152 Gene type: protein_coding
Strand: - External links:
Genomic region: chr9:110190048-110208189 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_00_005600140 chr9:110081624-110214503 Sample_00_0056 Sigmoid colon sigmoid colon 3y 140 56 3746 238 11 290 1786 C9ORF152,AKAP2,PALM2-AKAP2,TXN
SE_02_109300151 chr9:110172820-110218222 Sample_02_1093 Mammary gland T47D_shCtrl_shRING1B_24hr 151 17 1385 101 4 34 647 C9ORF152,AKAP2,TXN
SE_02_109200197 chr9:110172824-110218132 Sample_02_1092 Mammary gland T47D_shCtrl_24hr 197 14 1384 101 4 34 647 C9ORF152,AKAP2,TXN
SE_02_108700136 chr9:110172956-110218528 Sample_02_1087 Mammary gland T47D_shCtrl_shRING1B_0 136 12 1391 100 4 34 647 C9ORF152,AKAP2,TXN
SE_02_035400099 chr9:110179763-110221706 Sample_02_0354 Colon Colo205 99 8 1302 95 6 36 647 C9ORF152,TXN
SE_02_024200640 chr9:110179852-110216744 Sample_02_0242 Colon V481 640 5 1133 80 4 33 647 C9ORF152,TXN
SE_02_047800229 chr9:110180203-110221697 Sample_02_0478 Colon normal colon mucosa 229 15 1292 95 6 36 647 C9ORF152,TXN
SE_02_035800192 chr9:110180281-110216620 Sample_02_0358 Colon LS180 192 5 1120 79 4 33 647 C9ORF152,TXN
SE_02_070900723 chr9:110180546-110215029 Sample_02_0709 Pancreas hT85_organoid 723 11 1070 73 4 32 647 C9ORF152,TXN
SE_02_125300561 chr9:110180625-110218430 Sample_02_1253 Mammary gland CAMA1 ER+/FGFR1-amplified 561 17 1171 82 4 33 647 C9ORF152,TXN
SE_02_047700182 chr9:110180638-110221567 Sample_02_0477 Colon intestinal epithelial organoids_139a 182 16 1270 92 6 36 647 C9ORF152,TXN
SE_02_071100283 chr9:110180639-110216369 Sample_02_0711 Pancreas hN35_organoid 283 15 1099 75 4 33 647 C9ORF152,TXN
SE_02_023700875 chr9:110181050-110221731 Sample_02_0237 Colon V389 875 15 1266 92 6 36 647 C9ORF152,TXN
SE_02_035500212 chr9:110183427-110218206 Sample_02_0355 Colon HCT15 212 7 1089 80 3 33 647 C9ORF152,TXN
SE_00_005800102 chr9:110183964-110214302 Sample_00_0058 Stomach stomach 34y 102 19 946 65 3 31 647 C9ORF152,TXN
SE_00_004200212 chr9:110184316-110217584 Sample_00_0042 Stomach stomach_30y 212 19 1037 76 3 33 647 C9ORF152,TXN
SE_00_004100297 chr9:110184615-110215013 Sample_00_0041 Stomach stomach_3y 297 12 952 66 3 32 647 C9ORF152,TXN
SE_01_008500413 chr9:110186857-110216706 Sample_01_0085 Stomach stomach 413 2 936 67 3 33 647 C9ORF152,TXN
SE_02_039400264 chr9:110187046-110218084 Sample_02_0394 Mammary gland T-47D_2 264 6 980 71 3 33 647 C9ORF152,TXN
SE_02_066900653 chr9:110187598-110210335 Sample_02_0669 Prostate prostate cancer_DSG 653 14 724 49 2 28 647 C9ORF152,TXN
SE_02_008600969 chr9:110187601-110210473 Sample_02_0086 Pancreas CAPAN1 969 4 731 50 2 28 647 C9ORF152,TXN
SE_02_025700138 chr9:110187960-110218228 Sample_02_0257 Endometrioid endometrioid_adenocarcinoma_TumorA 138 5 959 69 3 33 647 C9ORF152,TXN
SE_01_007100454 chr9:110187966-110214552 Sample_01_0071 Pancreas body-of-pancreas 454 6 841 55 3 31 647 C9ORF152,TXN
SE_02_016200271 chr9:110188047-110208804 Sample_02_0162 Prostate C4-2B_vehicle_24h 271 4 671 44 2 28 647 C9ORF152,TXN
SE_01_006800045 chr9:110188074-110209177 Sample_01_0068 Prostate: derived from metastatic site: vertebral metastasis VCaP 45 4 677 44 2 28 647 C9ORF152,TXN
SE_02_067300402 chr9:110188313-110208926 Sample_02_0673 Prostate LNCAP_FA 402 4 667 44 2 28 647 C9ORF152,TXN
SE_02_020500304 chr9:110188395-110213613 Sample_02_0205 Stomach Gastric_Primary_Sample_T 304 8 805 51 3 31 647 C9ORF152,TXN
SE_02_042400563 chr9:110188412-110218079 Sample_02_0424 Colon SW620 563 6 947 67 3 33 647 C9ORF152,TXN
SE_01_010101074 chr9:110188610-110214929 Sample_01_0101 Pancreas pancreas_54y 1074 8 841 57 3 32 647 C9ORF152,TXN,C9orf152
SE_02_067200983 chr9:110188732-110209036 Sample_02_0672 Endometrium endometrium cancer_DSG 983 10 656 44 2 28 647 C9ORF152,TXN
SE_02_081900888 chr9:110188754-110218082 Sample_02_0819 Ovary Mucinous ovarian cancer 888 11 936 67 3 33 647 C9ORF152,TXN
SE_02_067400784 chr9:110188940-110208843 Sample_02_0674 Endometrium E1_FA 784 10 652 44 2 28 647 C9ORF152,TXN
SE_02_071000336 chr9:110192869-110216044 Sample_02_0710 Pancreas hN34_organoid 336 13 751 48 2 31 647 C9ORF152,TXN
SE_02_040400443 chr9:110204178-110216558 Sample_02_0404 Mammary gland ZR-75-1_2 443 4 370 27 1 8 259 C9ORF152,TXN
SE_02_108600182 chr9:110204469-110218201 Sample_02_1086 Mammary gland T47D_shCtrl_0hr 182 5 414 31 1 8 259 C9ORF152,TXN
SE_02_080900318 chr9:110204896-110217597 Sample_02_0809 Mammary gland T47D Serum 318 3 384 29 1 8 259 C9ORF152,TXN
SE_02_108800267 chr9:110205104-110218189 Sample_02_1088 Mammary gland T47D_shCtrl_45min 267 5 405 30 1 8 259 C9ORF152,TXN
SE_02_109100195 chr9:110205152-110218098 Sample_02_1091 Mammary gland T47D_shCtrl_shRING1B_8hr 195 3 401 30 1 8 259 C9ORF152,TXN
SE_02_108900314 chr9:110205221-110218180 Sample_02_1089 Mammary gland T47D_shCtrl_shRING1B_45min 314 6 401 30 1 8 259 C9ORF152,TXN
SE_02_109000278 chr9:110205288-110218026 Sample_02_1090 Mammary gland T47D_shCtrl_8hr 278 5 393 30 1 8 259 C9ORF152,TXN
Genomic distribution of SEs associated with C9ORF152
Genome Browser

The strength of the tissue affected by the gene

Expression of C9ORF152

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)