SEdb 2.0
  1. Search
  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000168397
Gene: ATG4B Gene type: protein_coding
Strand: + External links:
Genomic region: chr2:241637213-241673857 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_088601866 chr2:241599304-241641725 Sample_02_0886 Skin foreskin_ p63KLF4 1866 13 0 102 0 81 939 THAP4,ATG4B,BOK-AS1,DTYMK,BOK
SE_02_104300934 chr2:241606292-241650202 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 934 15 0 120 0 76 718 THAP4,ATG4B,BOK-AS1,DTYMK,BOK
SE_02_146600549 chr2:241609446-241642664 Sample_02_1466 Blood HUDEP-2_BCL11AKO 549 8 0 82 0 65 654 THAP4,ATG4B,DTYMK
SE_02_073900600 chr2:241609841-241639647 Sample_02_0739 Blood Nalm6 600 11 0 72 0 65 654 THAP4,ATG4B,DTYMK
SE_02_065800001 chr2:241609842-241641253 Sample_02_0658 Tracheobronchial epithelial HTBE_H5N1_18h 1 9 0 78 0 65 654 THAP4,ATG4B,DTYMK
SE_02_101700872 chr2:241627613-241681629 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 872 12 0 240 0 129 2681 THAP4,ATG4B,DTYMK,ING5
SE_02_076000751 chr2:241629303-241666217 Sample_02_0760 Ovary BIN-67_SMARCA4 751 9 0 115 0 85 1060 THAP4,ATG4B,ING5,DTYMK
SE_02_103601129 chr2:241647916-241698068 Sample_02_1036 Mammary gland HCC70_XY018 1129 11 0 237 0 82 2297 ATG4B,DTYMK,ING5,D2HGDH,THAP4
SE_02_138200455 chr2:241650379-241699535 Sample_02_1382 Pancreas Pancreatic cancer cells_Triptolide 455 17 0 239 0 82 2297 ATG4B,DTYMK,ING5,D2HGDH,THAP4
SE_02_138100439 chr2:241652814-241689657 Sample_02_1381 Pancreas Pancreatic cancer cells_DMSO 439 20 0 194 0 74 2167 ATG4B,DTYMK,ING5,D2HGDH,THAP4
SE_02_104602261 chr2:241655637-241679441 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 2261 12 0 144 0 42 1627 ATG4B,DTYMK,ING5,THAP4
SE_02_067401285 chr2:241657754-241666231 Sample_02_0674 Endometrium E1_FA 1285 5 0 23 0 3 67 ATG4B,ING5,DTYMK,THAP4
SE_02_088601688 chr2:241659155-241691807 Sample_02_0886 Skin foreskin_ p63KLF4 1688 8 0 177 0 55 1881 ATG4B,DTYMK,ING5,D2HGDH,THAP4
SE_02_158400802 chr2:241664766-241692951 Sample_02_1584 Brain U87 GBM_Mock 802 4 0 164 0 52 1844 ATG4B,DTYMK,ING5,D2HGDH,THAP4
SE_02_104301704 chr2:241664865-241699923 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 1704 7 0 193 0 52 1844 ATG4B,DTYMK,ING5,D2HGDH,THAP4
SE_02_111200793 chr2:241665050-241703247 Sample_02_1112 T lymphocyte THP-6 T-ALL 793 10 0 206 0 80 1984 ING5,ATG4B,DTYMK,D2HGDH,THAP4
SE_02_076600544 chr2:241665119-241704044 Sample_02_0766 Ovary PEO1 544 10 0 211 0 81 1984 ING5,ATG4B,DTYMK,D2HGDH,THAP4
Genomic distribution of SEs associated with ATG4B
Genome Browser

The strength of the tissue affected by the gene

Expression of ATG4B

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)