SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000215915
Gene: ATAD3C Gene type: protein_coding
Strand: + External links:
Genomic region: chr1:1449689-1470163 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_021500070 chr1:1431894-1460754 Sample_02_0215 Skin NHEK_siGRHL3 70 6 1177 94 0 119 2493 VWA1,ATAD3C,TMEM88B,MRPL20,LOC441869,ATAD3B,LOC148413,CCNL2
SE_02_104602493 chr1:1441049-1467749 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 2493 10 1162 102 0 41 1704 VWA1,ATAD3C,ATAD3A,ANKRD65,MRPL20,ATAD3B,LOC148413,CCNL2,LOC102724312,TMEM88B
SE_02_104800979 chr1:1445422-1482819 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 979 6 1645 140 0 76 2560 ATAD3B,ATAD3C,ATAD3A,VWA1,ANKRD65,MRPL20,LOC148413,CCNL2,LOC102724312,TMEM88B
SE_02_088601569 chr1:1461513-1490779 Sample_02_0886 Skin foreskin_ p63KLF4 1569 8 1427 118 1 72 2300 ATAD3B,ATAD3C,ATAD3A,VWA1,ANKRD65,TMEM240,LOC102724312,TMEM88B
SE_02_010600171 chr1:1461542-1491089 Sample_02_0106 Skin NHEK_M 171 8 1442 118 1 72 2315 ATAD3B,ATAD3C,ATAD3A,TMEM88B,VWA1,LOC441869,C1ORF70
SE_02_021600694 chr1:1461980-1482631 Sample_02_0216 Skin NHEK_scramble 694 7 886 71 0 38 1346 ATAD3B,ATAD3C,ATAD3A,TMEM88B,VWA1,LOC441869
SE_02_104900718 chr1:1462671-1520816 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 718 20 2738 229 1 102 3485 ATAD3A,ATAD3B,ATAD3C,VWA1,ANKRD65,TMEM240,LOC102724312,TMEM88B
SE_02_012400505 chr1:1467672-1476298 Sample_02_0124 Embryo Embryonic-stem-cells_Naive 505 1 332 27 0 22 619 ATAD3B,ATAD3C,ATAD3A,TMEM88B,VWA1,LOC441869
Genomic distribution of SEs associated with ATAD3C
Genome Browser

The strength of the tissue affected by the gene

Expression of ATAD3C

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)