SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000160072
Gene: ATAD3B Gene type: protein_coding
Strand: + External links:
Genomic region: chr1:1471765-1497848 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_104800979 chr1:1445422-1482819 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 979 6 1645 140 0 76 2560 ATAD3B,ATAD3C,ATAD3A,VWA1,ANKRD65,MRPL20,LOC148413,CCNL2,LOC102724312,TMEM88B
SE_02_088601569 chr1:1461513-1490779 Sample_02_0886 Skin foreskin_ p63KLF4 1569 8 1427 118 1 72 2300 ATAD3B,ATAD3C,ATAD3A,VWA1,ANKRD65,TMEM240,LOC102724312,TMEM88B
SE_02_010600171 chr1:1461542-1491089 Sample_02_0106 Skin NHEK_M 171 8 1442 118 1 72 2315 ATAD3B,ATAD3C,ATAD3A,TMEM88B,VWA1,LOC441869,C1ORF70
SE_02_021600694 chr1:1461980-1482631 Sample_02_0216 Skin NHEK_scramble 694 7 886 71 0 38 1346 ATAD3B,ATAD3C,ATAD3A,TMEM88B,VWA1,LOC441869
SE_02_104900718 chr1:1462671-1520816 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 718 20 2738 229 1 102 3485 ATAD3A,ATAD3B,ATAD3C,VWA1,ANKRD65,TMEM240,LOC102724312,TMEM88B
SE_02_012400505 chr1:1467672-1476298 Sample_02_0124 Embryo Embryonic-stem-cells_Naive 505 1 332 27 0 22 619 ATAD3B,ATAD3C,ATAD3A,TMEM88B,VWA1,LOC441869
SE_02_138300120 chr1:1473535-1572858 Sample_02_1383 Pancreas Pancreatic cancer cells_THZ1 120 57 4479 396 5 248 5958 ATAD3A,ATAD3B,SSU72,TMEM240,C1ORF233,ATAD3C,VWA1,MIB2,LOC102724312,TMEM88B
SE_02_138100122 chr1:1473650-1571216 Sample_02_1381 Pancreas Pancreatic cancer cells_DMSO 122 50 4438 392 5 248 5958 ATAD3A,ATAD3B,SSU72,TMEM240,C1ORF233,ATAD3C,VWA1,MIB2,LOC102724312,TMEM88B
SE_02_103500203 chr1:1474288-1558179 Sample_02_1035 Mammary gland HCC70_Vehicle 203 33 3942 346 3 234 5498 ATAD3A,ATAD3B,SSU72,TMEM240,C1ORF233,ATAD3C,VWA1,LOC102724312,TMEM88B
Genomic distribution of SEs associated with ATAD3B
Genome Browser

The strength of the tissue affected by the gene

Expression of ATAD3B

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)