SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000119778
Gene: ATAD2B Gene type: protein_coding
Strand: - External links:
Genomic region: chr2:23748664-23927123 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_128001258 chr2:23742973-23762553 Sample_02_1280 Bone Mesenchymal stem cells_SPC_mutation_ EF1 1258 6 419 46 1 105 438 ATAD2B
SE_02_104300761 chr2:23810759-23930210 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 761 30 3051 382 6 208 1003 ATAD2B,UBXN2A
SE_02_103600374 chr2:23877543-23962150 Sample_02_1036 Mammary gland HCC70_XY018 374 27 2204 314 5 125 790 UBXN2A,ATAD2B,MFSD2B
SE_02_023200661 chr2:23891183-23929591 Sample_02_0232 Tonsil ILC3 661 11 979 132 2 94 385 ATAD2B,UBXN2A
SE_02_061700923 chr2:23891339-23928621 Sample_02_0617 HSPC FL CD34+CD38-/lowCD90+ HSPC 923 6 948 132 2 94 385 ATAD2B,UBXN2A
SE_02_142900919 chr2:23891432-23929052 Sample_02_1429 Blood GM12878_WT 919 10 955 132 2 94 385 ATAD2B,UBXN2A
SE_02_143100905 chr2:23891512-23928592 Sample_02_1431 Blood T cell 905 4 942 132 2 94 385 ATAD2B,UBXN2A
SE_02_103400581 chr2:23891571-23928410 Sample_02_1034 Blood AML cell 581 9 933 130 2 94 385 ATAD2B,UBXN2A
SE_02_088601562 chr2:23898887-23937429 Sample_02_0886 Skin foreskin_ p63KLF4 1562 5 1001 149 3 78 341 ATAD2B,UBXN2A
SE_02_075900400 chr2:23899619-23928601 Sample_02_0759 Ovary BIN-67_Control 400 7 766 114 2 78 341 ATAD2B,UBXN2A
SE_02_076100276 chr2:23899817-23929390 Sample_02_0761 Ovary BIN-67_SMARCA4.T910M 276 6 784 113 2 78 341 ATAD2B,UBXN2A
SE_02_076000451 chr2:23899942-23928644 Sample_02_0760 Ovary BIN-67_SMARCA4 451 7 760 113 2 78 341 ATAD2B,UBXN2A
SE_02_104902090 chr2:23912733-23933010 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 2090 11 545 65 2 53 341 ATAD2B,UBXN2A
SE_01_002100934 chr2:23923459-23928590 Sample_01_0021 Skin bipolar-neuron 934 1 129 19 0 48 341 ATAD2B,UBXN2A
SE_01_008801190 chr2:23924004-23948174 Sample_01_0088 Tibial nerve tibial-nerve 1190 2 618 94 3 52 573 ATAD2B,UBXN2A
SE_00_002501036 chr2:23924612-23941600 Sample_00_0025 Muscle of leg muscle-of-leg 1036 2 427 61 2 50 573 ATAD2B,UBXN2A
SE_00_003800595 chr2:23924655-23945737 Sample_00_0038 Spinal cord spinal-cord_108d 595 3 536 81 3 49 573 ATAD2B,UBXN2A
SE_02_118500817 chr2:23924809-23946288 Sample_02_1185 Brain GBM14 817 4 546 83 3 48 573 UBXN2A,ATAD2B
SE_02_096500734 chr2:23925102-23928173 Sample_02_0965 Brain H3.3K27M_HSJ031-C3-Rx_cells 734 1 74 9 0 32 341 ATAD2B,UBXN2A
SE_02_065000426 chr2:23925103-23928262 Sample_02_0650 Tracheobronchial epithelial HTBE_H3N2_12h 426 1 76 11 0 32 341 ATAD2B,UBXN2A
SE_00_002700930 chr2:23925186-23941475 Sample_00_0027 Blood natural-killer-cell 930 2 407 60 2 37 573 ATAD2B,UBXN2A
SE_02_036500019 chr2:23925310-23945232 Sample_02_0365 Skeletal muscle NCI0075 19 2 507 78 2 37 573 ATAD2B,UBXN2A
SE_00_003900601 chr2:23925416-23941454 Sample_00_0039 Spleen spleen_3y 601 2 399 59 2 36 573 ATAD2B,UBXN2A,SF3B14
SE_00_002200797 chr2:23925688-23941343 Sample_00_0022 Lung lung_30y 797 2 385 57 2 35 573 ATAD2B,UBXN2A
SE_00_003500685 chr2:23925709-23941214 Sample_00_0035 Sigmoid colon sigmoid-colon 685 2 379 56 2 35 573 ATAD2B,UBXN2A
SE_00_003401141 chr2:23925730-23944974 Sample_00_0034 Right cardiac atrium right-cardiac-atrium 1141 3 490 76 2 35 573 ATAD2B,UBXN2A
SE_02_004500805 chr2:23925747-23941237 Sample_02_0045 Embryo endodermal CyT49_ES_D7 805 3 378 56 2 35 573 ATAD2B,UBXN2A
SE_00_004000604 chr2:23925757-23941334 Sample_00_0040 Spleen spleen_30y 604 3 381 57 2 35 573 ATAD2B,UBXN2A,SF3B14
SE_02_004600576 chr2:23925775-23941195 Sample_02_0046 Embryo endodermal CyT49_ES_D10 576 3 375 56 2 35 573 ATAD2B,UBXN2A
Genomic distribution of SEs associated with ATAD2B
Genome Browser

The strength of the tissue affected by the gene

Expression of ATAD2B

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)