SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000221838
Gene: AP4M1 Gene type: protein_coding
Strand: + External links:
Genomic region: chr7:100101549-100110345 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_00_001600329 chr7:100097985-100103110 Sample_00_0016 Foreskin iPS-DF-19.11 334 1 177 15 1 77 946 AP4M1,MCM7,CNPY4,C7ORF59,MIR25,TAF6,COPS6,MIR106B,ZSCAN21,ZNF3,MIR93,MBLAC1
SE_02_101701432 chr7:100098052-100103574 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1432 1 188 17 1 77 1000 MCM7,AP4M1,ZSCAN21,MIR106B,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,LAMTOR4,MIR25,COPS6
SE_02_146900751 chr7:100098252-100103389 Sample_02_1469 Umbilical Vein HUVEC 751 1 178 16 0 70 935 MCM7,AP4M1,ZSCAN21,MIR106B,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,LAMTOR4,MIR25,COPS6
SE_02_058400578 chr7:100098533-100103067 Sample_02_0584 Lung H1299 WT 578 1 156 15 0 70 842 MCM7,AP4M1,ZSCAN21,MIR106B,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,LAMTOR4,MIR25,COPS6
SE_02_097200740 chr7:100098916-100103471 Sample_02_0972 Brain H3.3K27M-KO_BT245-D2p8-Rx_R1_cells 740 1 158 14 0 59 833 MCM7,AP4M1,ZSCAN21,MIR106B,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,LAMTOR4,MIR25,COPS6
SE_02_115900481 chr7:100098970-100103969 Sample_02_1159 Mammary gland MCF7 481 1 179 16 0 65 919 MCM7,AP4M1,ZSCAN21,MIR106B,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,LAMTOR4,MIR25,COPS6
SE_02_085200479 chr7:100098970-100103985 Sample_02_0852 Mammary gland MCF7L-P 479 1 180 16 0 65 919 MCM7,AP4M1,ZSCAN21,MIR106B,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,LAMTOR4,MIR25,COPS6
SE_02_068500232 chr7:100099223-100102912 Sample_02_0685 Lung NCI-H1048_no infection 232 1 130 12 0 51 718 MCM7,AP4M1,ZSCAN21,MIR106B,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,LAMTOR4,MIR25,COPS6
SE_02_096800486 chr7:100099326-100103103 Sample_02_0968 Brain H3.3K27M_pcGBM2p18_cells 486 1 129 12 0 51 732 MCM7,AP4M1,ZSCAN21,MIR106B,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,LAMTOR4,MIR25,COPS6
SE_00_001001231 chr7:100099338-100102963 Sample_00_0010 Embryo endodermal-cell 1231 1 126 12 0 50 705 AP4M1,MCM7,CNPY4,C7ORF59,MIR25,TAF6,COPS6,MIR106B,ZSCAN21,ZNF3,MIR93,MBLAC1
SE_02_085400627 chr7:100099443-100102847 Sample_02_0854 Glioblastoma Glioblastoma neurosphere cell_HF-2354 627 1 111 12 0 44 668 MCM7,AP4M1,ZSCAN21,MIR106B,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,LAMTOR4,MIR25,COPS6
SE_02_143300226 chr7:100099454-100103632 Sample_02_1433 Bone A673 STAG2 null 226 1 132 14 0 46 785 MCM7,AP4M1,ZSCAN21,MIR106B,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,LAMTOR4,MIR25,COPS6
SE_02_143200448 chr7:100099468-100103022 Sample_02_1432 Bone A673 STAG2 WT 448 1 114 12 0 45 701 MCM7,AP4M1,ZSCAN21,MIR106B,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,LAMTOR4,MIR25,COPS6
SE_02_126301470 chr7:100099469-100103470 Sample_02_1263 Bone Im-GCT-4072_G34W unedited 1470 1 129 13 0 46 758 MCM7,AP4M1,ZSCAN21,MIR106B,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,LAMTOR4,MIR25,COPS6
SE_02_126800509 chr7:100099958-100104201 Sample_02_1268 Bone Im-GCT-4072_G34W unedited_U3 509 1 139 16 0 50 821 MCM7,AP4M1,MIR106B,ZNF3,TAF6,MIR93,MBLAC1,CNPY4,LAMTOR4,MIR25,COPS6
Genomic distribution of SEs associated with AP4M1
Genome Browser

The strength of the tissue affected by the gene

Expression of AP4M1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)