SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: overlap Ensembl ID:
Gene: AMICA1 Gene type:
Strand: External links:
Genomic region: :- Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_045300089 chr11:118092618-118198811 Sample_02_0453 Neuroblastoma SJNB3 89 20 3179 385 15 326 4239 SCN2B,AMICA1,SCN4B,TMPRSS4,TMPRSS4-AS1
SE_02_090100899 chr11:118147572-118211555 Sample_02_0901 Heart left ventricle_LV1471 899 13 1833 215 12 232 2136 SCN2B,SCN4B,AMICA1,MPZL3
SE_00_005200853 chr11:118166072-118196469 Sample_00_0052 Heart left ventricle 3y 853 6 894 92 5 98 783 SCN2B,AMICA1,SCN4B
SE_02_133000164 chr11:118168445-118247359 Sample_02_1330 Blood AMU-AML1 164 26 2066 294 12 204 1762 SCN2B,AMICA1,MPZL3,SCN4B,MPZL2
SE_02_120301222 chr11:118171050-118196385 Sample_02_1203 Brain NB1 1222 5 725 79 4 65 267 SCN2B,AMICA1,SCN4B
SE_02_131200029 chr11:118171486-118243651 Sample_02_1312 Brain hMGLs_WT 29 30 1878 260 10 190 1651 SCN2B,AMICA1,MPZL3,SCN4B,MPZL2
SE_02_131500057 chr11:118171523-118242104 Sample_02_1315 Brain hMGLs_INPP5D SNP 57 30 1834 249 10 186 1651 SCN2B,AMICA1,MPZL3,SCN4B,MPZL2
SE_02_131300058 chr11:118171721-118242070 Sample_02_1313 Brain hMGLs_CD33_SNP 58 29 1828 249 10 186 1651 SCN2B,AMICA1,MPZL3,SCN4B,MPZL2
SE_02_131800030 chr11:118171879-118242166 Sample_02_1318 Brain hMGLs_SORL1-A528T 30 22 1821 250 10 184 1651 SCN2B,AMICA1,MPZL3,SCN4B,MPZL2
SE_02_131700054 chr11:118172036-118242239 Sample_02_1317 Brain hMGLs_SORL1-KO 54 19 1817 249 10 184 1651 SCN2B,AMICA1,MPZL3,SCN4B,MPZL2
SE_02_146000065 chr11:118172352-118247260 Sample_02_1460 Blood Mutz-3 65 19 1944 287 10 189 1651 SCN2B,AMICA1,MPZL3,SCN4B,MPZL2
SE_02_134500024 chr11:118173514-118247198 Sample_02_1345 Leukophereses leukophereses_p358 24 31 1904 281 10 188 1651 SCN2B,AMICA1,MPZL3,SCN4B,MPZL2
SE_02_131600111 chr11:118173799-118241946 Sample_02_1316 Brain hMGLs_TREM2-R47H 111 18 1761 241 9 182 1651 SCN2B,AMICA1,MPZL3,SCN4B,MPZL2
SE_02_057500872 chr11:118183983-118242269 Sample_02_0575 Blood MOLM13_sgLKB1e2 872 12 1464 213 8 144 1546 MPZL3,AMICA1,SCN4B,MPZL2,SCN2B
SE_02_083300116 chr11:118184385-118254325 Sample_02_0833 Bone marrow TEX-HIST1H3F-K27I-2-Rx_cells 116 16 1757 290 9 182 1693 MPZL3,AMICA1,MPZL2,SCN4B,SCN2B
SE_02_034200150 chr11:118184450-118245958 Sample_02_0342 Liver HSPCs_F0 150 13 1557 244 8 149 1546 AMICA1,MPZL3,MPZL2,SCN4B,SCN2B
SE_02_083700128 chr11:118184485-118250358 Sample_02_0837 Bone marrow TEX-Luciferase-Rx_cells 128 18 1653 271 9 150 1546 MPZL3,AMICA1,SCN4B,MPZL2,SCN2B
SE_02_083500595 chr11:118184500-118250285 Sample_02_0835 Bone marrow TEX-HIST1H3H-K27M-Rx_cells 595 22 1651 271 9 150 1546 MPZL3,AMICA1,SCN4B,MPZL2,SCN2B
SE_02_083400149 chr11:118184531-118255078 Sample_02_0834 Bone marrow TEX-HIST1H3F-WT-Rx_cells 149 21 1774 292 9 185 1738 MPZL3,AMICA1,MPZL2,CD3E,SCN4B,SCN2B
SE_02_025600785 chr11:118184736-118243628 Sample_02_0256 Peripheral blood MV411 785 9 1483 217 8 147 1546 AMICA1,MPZL3,MPZL2,SCN4B,SCN2B
SE_02_083600152 chr11:118184885-118254702 Sample_02_0836 Bone marrow TEX-HIST1H3H-WT-Rx_cells 152 20 1754 287 9 185 1716 MPZL3,AMICA1,MPZL2,CD3E,SCN4B,SCN2B
SE_02_081601262 chr11:118190761-118247302 Sample_02_0816 Ovary Clear cell ovarian cancer 1262 20 1420 229 8 144 1546 MPZL3,AMICA1,SCN4B,MPZL2,SCN2B
SE_02_020700102 chr11:118193176-118215945 Sample_02_0207 Stomach FU97 102 9 559 87 6 69 944 AMICA1,MPZL2,MPZL3,SCN4B,SCN2B
SE_02_032200035 chr11:118193241-118218936 Sample_02_0322 Colon Caco-2 35 1 631 93 6 75 944 AMICA1,MPZL2,MPZL3,SCN4B,SCN2B
SE_02_004900445 chr11:118193384-118204717 Sample_02_0049 Embryo endodermal CyT49_GTtoH 445 2 298 52 3 35 620 AMICA1,MPZL3,SCN4B,SCN2B
SE_02_049401241 chr11:118193479-118203526 Sample_02_0494 Islets differentiated hESCs Late pancreatic progenitor cells 1241 2 269 49 2 31 508 AMICA1,MPZL3,SCN4B,SCN2B
SE_02_028500297 chr11:118193512-118215683 Sample_02_0285 Liver HuH7_untreat 297 3 547 86 5 67 944 AMICA1,MPZL2,MPZL3,SCN4B,SCN2B
SE_02_004800494 chr11:118193518-118213041 Sample_02_0048 Embryo endodermal CyT49_HE 494 3 484 82 5 58 849 AMICA1,MPZL3,SCN4B,SCN2B
SE_01_008200678 chr11:118193571-118248069 Sample_01_0082 Right lobe of liver right-lobe-of-liver 678 11 1350 221 8 143 1544 AMICA1,MPZL3,MPZL2,SCN4B,SCN2B
SE_02_018500765 chr11:118193576-118209754 Sample_02_0185 Skin UACC257 765 5 406 71 4 49 668 AMICA1,MPZL3,SCN4B,SCN2B
SE_02_078400720 chr11:118193591-118247034 Sample_02_0784 Blood OSU-CLL 720 11 1330 219 8 142 1541 MPZL3,AMICA1,SCN4B,MPZL2,SCN2B
SE_02_104200275 chr11:118194018-118247093 Sample_02_1042 Peripheral blood CD4+ cells_CTCL1137 275 15 1316 217 7 142 1477 MPZL3,AMICA1,SCN4B,MPZL2,SCN2B
SE_02_047600857 chr11:118194022-118212591 Sample_02_0476 iPSCs hiPSC derived hepatocyte-like cells 857 8 452 78 4 54 719 AMICA1,MPZL3,SCN4B,SCN2B
SE_01_003700623 chr11:118194217-118215820 Sample_01_0037 Liver hepatocyte 623 5 527 84 5 67 828 AMICA1,MPZL2,MPZL3,SCN4B,SCN2B
SE_00_002000414 chr11:118194350-118215934 Sample_00_0020 Large intestine large-intestine_108d 414 5 523 84 5 65 815 AMICA1,MPZL2,MPZL3,SCN4B,SCN2B
SE_00_003600905 chr11:118194536-118215583 Sample_00_0036 Small intestine small-intestine_108days 905 5 511 83 4 62 792 AMICA1,MPZL2,MPZL3,SCN4B,SCN2B
SE_00_005600791 chr11:118195061-118247161 Sample_00_0056 Sigmoid colon sigmoid colon 3y 791 24 1292 217 7 139 1384 MPZL3,AMICA1,SCN4B,MPZL2,SCN2B
SE_02_012600144 chr11:118197552-118235913 Sample_02_0126 Blood Induced-regulatory-T-cells_DMSO 144 1 933 139 6 87 1168 AMICA1,MPZL3,MPZL2,SCN2B,SCN4B
SE_02_013200029 chr11:118197552-118317669 Sample_02_0132 Lung 1015_CL 29 11 3044 478 14 279 2631 AMICA1,CD3E,MPZL3,MPZL2,CD3G,CD3D,SCN2B,UBE4A,SCN4B
SE_02_033600599 chr11:118197970-118255029 Sample_02_0336 Haematopoietic and lymphoid tissue SET2 599 6 1398 246 7 163 1404 AMICA1,MPZL3,MPZL2,SCN4B,SCN2B,CD3E
SE_00_004400236 chr11:118198061-118253442 Sample_00_0044 Cord blood T-cell 236 9 1356 238 7 154 1310 AMICA1,MPZL3,MPZL2,SCN2B,SCN4B
SE_02_013100037 chr11:118198069-118284847 Sample_02_0131 Lung 1015_PT 37 9 2132 357 12 232 1817 AMICA1,MPZL3,MPZL2,SCN4B,SCN2B,CD3E
SE_02_045600035 chr11:118198122-118252993 Sample_02_0456 Th17 lymphocytes Th17-IL-10- Day 0 35 10 1350 237 7 154 1290 MPZL3,AMICA1,SCN4B,MPZL2,SCN2B
SE_02_045400023 chr11:118198183-118253162 Sample_02_0454 Th17 lymphocytes Th17-IL-10+ Day 0 23 3 1350 237 7 154 1281 MPZL3,AMICA1,SCN4B,MPZL2,SCN2B
SE_02_082100070 chr11:118198215-118253649 Sample_02_0821 Haematopoietic and lymphoid tissue SET-2_WT_GSK-LSD1 70 9 1356 238 7 156 1306 MPZL3,AMICA1,MPZL2,SCN4B,SCN2B
SE_02_023300366 chr11:118198247-118247608 Sample_02_0233 Tonsil Th1 366 11 1207 202 7 127 1183 AMICA1,MPZL3,MPZL2,SCN2B,SCN4B
SE_02_023400371 chr11:118198279-118250250 Sample_02_0234 Tonsil Th17 371 13 1266 222 7 128 1182 AMICA1,MPZL3,MPZL2,SCN2B,SCN4B
SE_02_014400665 chr11:118198331-118242773 Sample_02_0144 Peripheral blood MV411_DMSO 665 5 1080 165 6 123 1182 AMICA1,MPZL3,MPZL2,SCN2B,SCN4B
SE_02_082600524 chr11:118198385-118249431 Sample_02_0826 Stomach gastric tumor 524 21 1248 217 7 127 1182 MPZL3,AMICA1,SCN4B,MPZL2,SCN2B
SE_02_045700138 chr11:118198436-118249948 Sample_02_0457 Th17 lymphocytes Th17-IL-10- Day 5 138 16 1254 219 7 128 1182 MPZL3,AMICA1,SCN4B,MPZL2,SCN2B
SE_02_046000308 chr11:118198443-118242780 Sample_02_0460 Blood ME-1_I-10-49_6h 308 6 1073 165 6 123 1182 MPZL3,AMICA1,SCN4B,MPZL2,SCN2B
SE_02_061200627 chr11:118198444-118246959 Sample_02_0612 Liposarcoma DDLPS_T2 627 12 1185 199 7 127 1182 MPZL3,AMICA1,SCN4B,MPZL2,SCN2B
SE_02_092700154 chr11:118198628-118245363 Sample_02_0927 Peripheral blood neutrophils_US 154 14 1140 189 6 122 1182 MPZL3,AMICA1,SCN4B,MPZL2,SCN2B,CD3G,CD3D,CD3E
SE_02_130300390 chr11:118198655-118250588 Sample_02_1303 Lymphoma RL_tazemetostat 390 19 1269 222 7 128 1182 MPZL3,AMICA1,SCN4B,MPZL2,SCN2B
SE_02_045500070 chr11:118198664-118250690 Sample_02_0455 Th17 lymphocytes Th17-IL-10+ Day 5 70 15 1272 223 7 128 1182 MPZL3,AMICA1,SCN4B,MPZL2,SCN2B
SE_02_149600325 chr11:118198830-118241595 Sample_02_1496 Other monocyte-derived dendritic cells_R848_24h 325 13 1036 156 6 117 1182 MPZL3,AMICA1,SCN4B,MPZL2,SCN2B
SE_02_062200361 chr11:118199396-118246280 Sample_02_0622 Blood EOL1_Naive 361 14 1144 190 6 123 1182 MPZL3,AMICA1,SCN4B,MPZL2,SCN2B,CD3E,UBE4A
SE_01_002400226 chr11:118199942-118243368 Sample_01_0024 Blood CD14-positive-monocyte 226 5 1061 163 6 120 1182 AMICA1,MPZL3,MPZL2,SCN2B,SCN4B
SE_02_010200189 chr11:118199963-118243217 Sample_02_0102 Peripheral blood Macrophages_GM-CSF_72h_IL4 189 6 1052 162 6 120 1182 AMICA1,MPZL3,MPZL2,SCN2B,SCN4B
SE_00_000900557 chr11:118200128-118253404 Sample_00_0009 Blood CD8-positive-alpha-beta-T-cell 557 9 1307 229 7 149 1283 AMICA1,MPZL3,MPZL2,SCN2B,SCN4B
SE_00_000800394 chr11:118200185-118253479 Sample_00_0008 Blood CD4-positive-alpha-beta-memory-T-cell 394 7 1305 229 7 150 1284 AMICA1,MPZL3,MPZL2,SCN2B,SCN4B
SE_02_023200286 chr11:118200260-118247665 Sample_02_0232 Tonsil ILC3 286 10 1159 194 7 122 1182 AMICA1,MPZL3,MPZL2,SCN2B,SCN4B
SE_02_023100123 chr11:118200433-118246853 Sample_02_0231 Tonsil ILC1 123 13 1138 189 7 122 1153 AMICA1,MPZL3,MPZL2,SCN2B,SCN4B
SE_02_002300298 chr11:118200621-118242114 Sample_02_0023 Blood CD8donorC 298 14 1009 152 6 117 1111 AMICA1,MPZL3,MPZL2,SCN2B,SCN4B
SE_02_153000441 chr11:118200991-118247784 Sample_02_1530 Peripheral blood neutrophils_0BA0X 441 10 1141 192 7 122 1085 MPZL3,AMICA1,SCN4B,MPZL2,SCN2B,CD3G,CD3D,CD3E
SE_02_135000323 chr11:118201053-118242645 Sample_02_1350 Leukophereses leukophereses_p456 323 9 1006 151 6 117 1085 MPZL3,AMICA1,SCN4B,MPZL2,SCN2B
SE_02_002200150 chr11:118201215-118253168 Sample_02_0022 Blood CD8donorA 150 16 1265 220 7 149 1172 AMICA1,MPZL3,MPZL2,SCN2B,SCN4B
SE_02_149400306 chr11:118201311-118242074 Sample_02_1494 Other monocyte-derived dendritic cells_0h 306 9 980 145 6 116 1085 MPZL3,AMICA1,SCN4B,MPZL2,SCN2B,CD3E,IL10RA
SE_01_008401281 chr11:118202212-118246524 Sample_01_0084 Spleen spleen 1281 9 1073 172 7 120 1085 AMICA1,MPZL3,MPZL2,SCN2B,SCN4B
SE_02_152900403 chr11:118202380-118246364 Sample_02_1529 Peripheral blood neutrophils_0BC75 403 19 1067 171 7 120 1085 MPZL3,AMICA1,SCN4B,MPZL2,SCN2B,CD3G,CD3D,CD3E
SE_02_131400199 chr11:118204197-118242191 Sample_02_1314 Brain hMGLs_TREM2-KO 199 16 921 131 5 104 954 MPZL3,AMICA1,MPZL2,SCN2B
SE_02_157300513 chr11:118204854-118242339 Sample_02_1573 Endothelial Undifferentiated Pleomorphic Sarcoma 513 10 903 130 4 104 926 MPZL3,AMICA1,MPZL2,SCN2B
SE_02_010300417 chr11:118205040-118242313 Sample_02_0103 Peripheral blood Macrophages_GM-CSF_72h_TNF-a_PGE2_Pam3CSK4 417 6 900 129 4 104 926 AMICA1,MPZL3,SCN2B,MPZL2
SE_02_010100331 chr11:118205269-118247769 Sample_02_0101 Peripheral blood Macrophages_GM-CSF_72h_IFN-y 331 5 1035 168 5 109 926 AMICA1,MPZL3,SCN2B,MPZL2
SE_00_000600612 chr11:118205297-118252807 Sample_00_0006 Blood CD14-positive-monocyte 612 6 1161 201 5 134 1013 AMICA1,MPZL3,SCN2B,MPZL2
SE_02_010400109 chr11:118205558-118246430 Sample_02_0104 Blood neutrophils 109 9 996 161 4 107 926 AMICA1,MPZL3,SCN2B,MPZL2
SE_01_005200092 chr11:118205578-118243559 Sample_01_0052 Blood neutrophil 92 4 922 134 3 105 926 AMICA1,MPZL3,SCN2B,MPZL2
SE_02_010000317 chr11:118205647-118242456 Sample_02_0100 Peripheral blood Macrophages_GM-CSF_72h 317 5 885 127 3 102 926 AMICA1,MPZL3,SCN2B,MPZL2
SE_02_092800568 chr11:118205654-118245447 Sample_02_0928 Peripheral blood neutrophils_Ecoli 568 13 972 155 3 105 926 MPZL3,AMICA1,MPZL2,SCN2B,CD3G,CD3D,CD3E,SCN4B
SE_00_005500437 chr11:118205753-118242208 Sample_00_0055 Spleen spleen 34y 437 11 878 126 3 102 920 MPZL3,AMICA1,MPZL2,SCN2B,CD3G,CD3D,CD3E,SCN4B,KMT2A
SE_02_134800126 chr11:118205861-118242371 Sample_02_1348 Leukophereses leukophereses_p408 126 10 876 127 3 102 907 MPZL3,AMICA1,MPZL2,SCN2B
SE_01_010400744 chr11:118205922-118246290 Sample_01_0104 Lung upper lobe of left lung 744 10 976 158 3 107 899 MPZL3,AMICA1,MPZL2,SCN2B
SE_02_134600313 chr11:118206117-118242563 Sample_02_1346 Leukophereses leukophereses_p400 313 7 876 127 3 102 885 MPZL3,AMICA1,MPZL2,SCN2B
SE_02_117500785 chr11:118206173-118246983 Sample_02_1175 Brain GBM03 785 11 991 162 4 107 875 MPZL3,AMICA1,MPZL2,SCN2B
SE_02_153100278 chr11:118206200-118246616 Sample_02_1531 Peripheral blood neutrophils_0B9ZK 278 15 980 161 4 107 875 MPZL3,AMICA1,MPZL2,SCN2B,CD3G,CD3D,CD3E,SCN4B
SE_02_134900303 chr11:118206207-118242270 Sample_02_1349 Leukophereses leukophereses_p411 303 8 864 126 3 102 875 MPZL3,AMICA1,MPZL2,SCN2B
SE_02_072800252 chr11:118206211-118230311 Sample_02_0728 Lymphoma I10_Mantle cell lymphoma tissue_DMSO 252 7 577 82 3 58 646 MPZL3,AMICA1,MPZL2,SCN2B
SE_02_073300293 chr11:118206214-118230115 Sample_02_0733 Lymphoma L20_Mantle cell lymphoma tissue_THZ1 293 5 569 82 3 58 646 MPZL3,AMICA1,MPZL2,SCN2B
SE_02_073100250 chr11:118206218-118230298 Sample_02_0731 Lymphoma J4_Mantle cell lymphoma tissue_THZ1 250 3 577 82 3 58 646 MPZL3,AMICA1,MPZL2,SCN2B
SE_02_073000213 chr11:118206295-118230420 Sample_02_0730 Lymphoma J4_Mantle cell lymphoma tissue_DMSO 213 6 571 80 3 58 646 MPZL3,AMICA1,MPZL2,SCN2B
SE_02_073200281 chr11:118206391-118230427 Sample_02_0732 Lymphoma L20_Mantle cell lymphoma tissue_DMSO 281 4 568 80 3 58 646 MPZL3,AMICA1,MPZL2,SCN2B
SE_02_061700153 chr11:118206471-118242738 Sample_02_0617 HSPC FL CD34+CD38-/lowCD90+ HSPC 153 7 862 125 3 100 875 MPZL3,AMICA1,MPZL2,SCN2B
SE_02_099300922 chr11:118206501-118242094 Sample_02_0993 Blood MOLM-13_empty 922 9 848 122 3 99 875 MPZL3,AMICA1,MPZL2,SCN2B
SE_02_012700257 chr11:118210307-118235949 Sample_02_0127 Blood Induced-regulatory-T-cells_CPI-703 257 1 631 80 3 54 770 AMICA1,MPZL3,SCN2B,MPZL2
SE_02_072900370 chr11:118214529-118230374 Sample_02_0729 Lymphoma I10_Mantle cell lymphoma tissue_THZ1 370 6 403 53 2 34 411 MPZL3,AMICA1,MPZL2,SCN2B
SE_02_020600142 chr11:118214989-118246320 Sample_02_0206 Stomach Gastric_Primary_Sample_N 142 8 782 131 3 81 609 AMICA1,MPZL3,SCN2B,MPZL2
SE_02_048700200 chr11:118215394-118241731 Sample_02_0487 Bone marrow HSCe_71y_CD34+,CD38-,Lineage- 200 6 653 95 2 71 602 MPZL3,AMICA1,MPZL2,SCN2B
SE_02_139300501 chr11:118215597-118242853 Sample_02_1393 Lymph node anaplastic large cell lymphoma cells_ALK+#54 501 6 674 99 2 73 602 MPZL3,AMICA1,MPZL2,SCN2B
SE_02_014800482 chr11:118215641-118242331 Sample_02_0148 Blood CD8_T_cells 482 5 662 98 2 72 602 AMICA1,MPZL3,SCN2B,MPZL2
SE_00_001100147 chr11:118216704-118281827 Sample_00_0011 Esophagus esophagus 147 13 1615 276 7 180 1211 AMICA1,MPZL3,MPZL2,SCN2B,CD3E,PZL2
SE_02_059200323 chr11:118216750-118242064 Sample_02_0592 PBMCs adult CD4+CD25hiCD127lo regulatory T cells 323 8 633 93 1 70 602 MPZL3,AMICA1,MPZL2,SCN2B
SE_02_048400348 chr11:118222835-118241973 Sample_02_0484 Bone marrow HSCe_23y_CD34+,CD38-,Lineage- 348 6 487 76 1 63 602 MPZL3,AMICA1,MPZL2,SCN2B
SE_00_004100288 chr11:118223858-118277964 Sample_00_0041 Stomach stomach_3y 288 7 1354 247 6 167 1211 AMICA1,MPZL3,MPZL2,SCN2B,CD3E
Genomic distribution of SEs associated with AMICA1
Genome Browser

The strength of the tissue affected by the gene

Expression of AMICA1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)