Gene overview
| Strategies/Algorithm: | overlap | Ensembl ID: | ENSG00000235529 |
| Gene: | AGAP1-IT1 | Gene type: | lncRNA |
| Strand: | + | External links: |
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| Genomic region: | chr2:235505751-235507566 | Genome Browser: |   |
Super-enhancer search result of gene-based
| SE ID | SE Region | Sample ID | Tissue type | Biosample name | SE rank | Element | Common SNP | eQTL | Risk SNP | TFBS | CRISPR Cas9 | Gene |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SE_02_122900413 | chr2:235441520-235523110 |
Sample_02_1229 | Haematopoietic and lymphoid tissue bone marrow | K562_Control | 413 | 33 | 2519 | 94 | 6 | 128 | 326 | AGAP1,AGAP1-IT1 |
| SE_02_122600153 | chr2:235477995-235515336 |
Sample_02_1226 | Bone marrow | RPMI-8226 | 153 | 11 | 1091 | 54 | 3 | 78 | 326 | AGAP1,AGAP1-IT1 |
| SE_02_122700694 | chr2:235478546-235514608 |
Sample_02_1227 | Bone marrow | U266 | 694 | 7 | 1048 | 50 | 3 | 76 | 326 | AGAP1,AGAP1-IT1 |
| SE_02_047800275 | chr2:235493272-235523123 |
Sample_02_0478 | Colon | normal colon mucosa | 275 | 12 | 929 | 58 | 3 | 73 | 326 | AGAP1,AGAP1-IT1 |
| SE_02_132201436 | chr2:235493420-235512292 |
Sample_02_1322 | Connective Tissue | HT1080_WT | 1436 | 5 | 576 | 29 | 3 | 56 | 326 | AGAP1,AGAP1-IT1 |
| SE_02_047700247 | chr2:235494012-235519177 |
Sample_02_0477 | Colon | intestinal epithelial organoids_139a | 247 | 10 | 796 | 47 | 3 | 53 | 283 | AGAP1,AGAP1-IT1 |
| SE_02_108200193 | chr2:235494089-235578286 |
Sample_02_1082 | Retina | retina | 193 | 36 | 2574 | 91 | 5 | 101 | 255 | AGAP1,AGAP1-IT1 |
| SE_02_108300558 | chr2:235494641-235550593 |
Sample_02_1083 | Macula | macula | 558 | 22 | 1754 | 80 | 3 | 73 | 80 | AGAP1,AGAP1-IT1 |
| SE_02_108000314 | chr2:235494690-235522933 |
Sample_02_1080 | Muscle | JR1 shCtrl | 314 | 7 | 910 | 58 | 3 | 44 | 72 | AGAP1,AGAP1-IT1 |
| SE_01_011501033 | chr2:235499903-235519110 |
Sample_01_0115 | Skeletal Muscle | myotube originated from skeletal muscle myoblast | 1033 | 6 | 617 | 40 | 2 | 30 | 0 | AGAP1,AGAP1-IT1 |
| SE_02_084000705 | chr2:235500560-235526906 |
Sample_02_0840 | Embryo | hNPCs_R1159Q/+ | 705 | 9 | 845 | 57 | 2 | 31 | 0 | AGAP1,AGAP1-IT1 |
Genomic distribution of SEs associated with AGAP1-IT1