SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000158691
Gene: ZSCAN12 Gene type: protein_coding
Strand: - External links:
Genomic region: chr6:28378955-28399734 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_109900649 chr6:28209966-28228133 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 649 6 429 53 7 0 981 ZSCAN9,TOB2P1,ZNF192P1,NKAPL,ZSCAN26,ZKSCAN4,PGBD1,ZSCAN12,ZKSCAN3,HIST1H3J,ZNF165,HIST1H4K,ZKSCAN8,HIST1H2AM,ZSCAN31,HIST1H2AI,HIST1H2AK,HIST1H2AL,HIST1H2BL,HIST1H2BN,HIST1H2BM,HIST1H2BO,HIST1H3I,HIST1H3H,HIST1H4L,HIST1H1B,HIST1H2AJ
SE_02_098700503 chr6:28211093-28228145 Sample_02_0987 Blood K562_Control_1 503 4 400 48 6 0 981 ZSCAN9,TOB2P1,ZNF192P1,NKAPL,ZSCAN26,ZKSCAN4,PGBD1,ZSCAN12,ZKSCAN3,HIST1H3J,ZNF165,HIST1H4K,ZKSCAN8,HIST1H2AM,ZSCAN31,HIST1H2AI,HIST1H2AK,HIST1H2AL,HIST1H2BL,HIST1H2BN,HIST1H2BM,HIST1H2BO,HIST1H3I,HIST1H3H,HIST1H4L,HIST1H1B,HIST1H2AJ
SE_02_122901159 chr6:28211151-28229163 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 1159 8 423 51 6 0 981 ZSCAN9,TOB2P1,ZNF192P1,NKAPL,ZSCAN26,ZKSCAN4,PGBD1,ZSCAN12,ZKSCAN3,HIST1H3J,ZNF165,HIST1H4K,ZKSCAN8,HIST1H2AM,ZSCAN31,HIST1H2AI,HIST1H2AK,HIST1H2AL,HIST1H2BL,HIST1H2BN,HIST1H2BM,HIST1H2BO,HIST1H3I,HIST1H3H,HIST1H4L,HIST1H1B,HIST1H2AJ
SE_04_000100123 chr6:28329646-28357808 Sample_04_0001 Blood heat shocked K562 123 4 601 132 13 21 796 ZSCAN31,ZKSCAN3,PGBD1,ZSCAN12,ZSCAN9,HIST1H2AK,HIST1H2BL,ZKSCAN4,NKAPL,HIST1H2BO,HIST1H2AI,HIST1H3J,HIST1H4K,ZKSCAN8,HIST1H2AL,HIST1H3H,HIST1H2AM,HIST1H2BN
SE_04_000200199 chr6:28332271-28357860 Sample_04_0002 Blood cold shocked K562 199 2 557 126 12 20 743 ZSCAN31,ZKSCAN3,ZSCAN12,ZSCAN9,PGBD1,HIST1H2AK,HIST1H2BL,ZKSCAN4,NKAPL,HIST1H2BO,HIST1H2AI,HIST1H3J,HIST1H4K,ZKSCAN8,HIST1H2AL,HIST1H3H,HIST1H2AM,HIST1H2BN
SE_02_122900427 chr6:28332775-28358028 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 427 9 547 124 12 21 725 ZSCAN31,ZKSCAN3,ZSCAN12,ZSCAN9,PGBD1,HIST1H2AK,HIST1H2BL,ZKSCAN4,NKAPL,HIST1H2BO,HIST1H2AI,HIST1H3J,HIST1H4K,ZKSCAN8,HIST1H2AL,HIST1H3H,HIST1H2AM,HIST1H2BN
SE_02_103300080 chr6:28332816-28358050 Sample_02_1033 Haematopoietic and lymphoid tissue bone marrow K562 80 4 545 124 12 21 725 ZSCAN31,ZKSCAN3,ZSCAN12,ZSCAN9,PGBD1,HIST1H2AK,HIST1H2BL,ZKSCAN4,NKAPL,HIST1H2BO,HIST1H2AI,HIST1H3J,HIST1H4K,ZKSCAN8,HIST1H2AL,HIST1H3H,HIST1H2AM,HIST1H2BN
SE_02_113000176 chr6:28332953-28357654 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 176 5 537 122 12 20 725 ZSCAN31,ZKSCAN3,ZSCAN12,ZSCAN9,PGBD1,HIST1H2AK,HIST1H2BL,ZKSCAN4,NKAPL,HIST1H2BO,HIST1H2AI,HIST1H3J,HIST1H4K,ZKSCAN8,HIST1H2AL,HIST1H3H,HIST1H2AM,HIST1H2BN
SE_02_098700169 chr6:28333078-28356969 Sample_02_0987 Blood K562_Control_1 169 7 524 119 12 20 725 ZSCAN31,ZKSCAN3,ZSCAN12,ZSCAN9,PGBD1,HIST1H2AK,HIST1H2BL,ZKSCAN4,NKAPL,HIST1H2BO,HIST1H2AI,HIST1H3J,HIST1H4K,ZKSCAN8,HIST1H2AL,HIST1H3H,HIST1H2AM,HIST1H2BN
SE_02_111600264 chr6:28333212-28357656 Sample_02_1116 Haematopoietic and lymphoid tissue bone marrow K562_native 264 5 533 122 12 20 725 ZSCAN31,ZKSCAN3,ZSCAN12,ZSCAN9,PGBD1,HIST1H2AK,HIST1H2BL,ZKSCAN4,NKAPL,HIST1H2BO,HIST1H2AI,HIST1H3J,HIST1H4K,ZKSCAN8,HIST1H2AL,HIST1H3H,HIST1H2AM,HIST1H2BN
SE_02_054500196 chr6:28333260-28357810 Sample_02_0545 Bone marrow K562 WT 196 4 535 122 12 20 725 ZSCAN31,ZKSCAN3,ZSCAN12,ZSCAN9,PGBD1,HIST1H2AK,HIST1H2BL,ZKSCAN4,NKAPL,HIST1H2BO,HIST1H2AI,HIST1H3J,HIST1H4K,ZKSCAN8,HIST1H2AL,HIST1H3H,HIST1H2AM,HIST1H2BN
SE_02_098800865 chr6:28542102-28568949 Sample_02_0988 Blood K562_EPZ 865 7 564 63 4 0 43 GPX6,GPX5,ZBED9,ZSCAN12,HIST1H2BL,HIST1H2AI,ZSCAN16,HIST1H3H,SCAND3
Genomic distribution of SEs associated with ZSCAN12
Genome Browser

The strength of the tissue affected by the gene

Expression of ZSCAN12

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)