SEdb 2.0
  1. Search
  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000049245
Gene: VAMP3 Gene type: protein_coding
Strand: + External links:
Genomic region: chr1:7771296-7781432 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_108200057 chr1:7666357-7756860 Sample_02_1082 Retina retina 57 37 2598 204 9 283 1286 CAMTA1,VAMP3,PER3,RERE
SE_02_100600206 chr1:7667852-7681205 Sample_02_1006 Brain Lateral temporal lobe_13T_Old 206 5 455 30 3 72 455 CAMTA1,VAMP3
SE_02_100400164 chr1:7667924-7680401 Sample_02_1004 Brain Lateral temporal lobe_10T_Old 164 5 428 27 3 68 453 CAMTA1,VAMP3
SE_02_120500724 chr1:7694897-7768872 Sample_02_1205 Brain NB3 724 27 2002 162 7 300 1014 CAMTA1,VAMP3,PER3
SE_02_108200595 chr1:7780936-7795443 Sample_02_1082 Retina retina 595 8 473 51 0 37 538 PER3,VAMP3,RERE,PARK7
SE_02_046600013 chr1:7970945-8141845 Sample_02_0466 Adipose visceral adipocytes 13 103 4517 456 11 393 984 ERRFI1,PARK7,TNFRSF9,VAMP3
SE_02_113200001 chr1:7981302-8240847 Sample_02_1132 Pancreas KLM1 wt 1 112 7414 576 17 462 905 ERRFI1,PARK7,LOC102724539,TNFRSF9,VAMP3
SE_02_085900013 chr1:8002995-8111668 Sample_02_0859 Prostate PC3 13 21 2675 235 6 340 567 ERRFI1,PARK7,VAMP3
SE_02_102400016 chr1:8003771-8138843 Sample_02_1024 Prostate PC3 cells 16 33 3562 365 7 384 567 ERRFI1,PARK7,VAMP3
SE_02_127500108 chr1:8004447-8063696 Sample_02_1275 Prostate PC3_Vorinostat 108 42 1405 118 2 244 567 ERRFI1,PARK7,VAMP3
SE_02_127600099 chr1:8004610-8099068 Sample_02_1276 Prostate PC3_GSK126 99 52 2262 171 5 331 567 ERRFI1,PARK7,VAMP3
Genomic distribution of SEs associated with VAMP3
Genome Browser

The strength of the tissue affected by the gene

Expression of VAMP3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)