SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000163960
Gene: UBXN7 Gene type: protein_coding
Strand: - External links:
Genomic region: chr3:196347662-196432430 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_04_000200778 chr3:196335455-196354601 Sample_04_0002 Blood cold shocked K562 778 2 549 63 1 30 226 TM4SF19-TCTEX1D2,UBXN7,TM4SF19,PCYT1A,TCTEX1D2,TM4SF19-AS1,TFRC
SE_04_000101196 chr3:196335573-196341483 Sample_04_0001 Blood heat shocked K562 1196 1 156 21 0 1 87 TM4SF19-TCTEX1D2,TM4SF19,PCYT1A,TCTEX1D2,TM4SF19-AS1,TFRC,UBXN7
SE_02_054500765 chr3:196336158-196341356 Sample_02_0545 Bone marrow K562 WT 765 1 139 16 0 1 87 TM4SF19-TCTEX1D2,TM4SF19,PCYT1A,TCTEX1D2,TM4SF19-AS1,TFRC,UBXN7
SE_02_111600688 chr3:196336253-196341531 Sample_02_1116 Haematopoietic and lymphoid tissue bone marrow K562_native 688 2 139 15 0 1 87 TM4SF19-TCTEX1D2,TM4SF19,PCYT1A,TCTEX1D2,TM4SF19-AS1,TFRC,UBXN7
SE_02_122901175 chr3:196477904-196529213 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 1175 13 1663 169 2 39 608 RNF168,SMCO1,WDR53,FBXO45,UBXN7,TFRC
SE_04_000100236 chr3:196485909-196529464 Sample_04_0001 Blood heat shocked K562 236 6 1419 150 2 29 584 RNF168,SMCO1,FBXO45,WDR53,TFRC,UBXN7
SE_04_000200671 chr3:196496302-196533745 Sample_04_0002 Blood cold shocked K562 671 5 1212 145 0 23 505 RNF168,SMCO1,FBXO45,WDR53,TFRC,UBXN7
SE_02_113000286 chr3:196496497-196529437 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 286 9 1049 119 0 23 505 RNF168,SMCO1,FBXO45,WDR53,TFRC,UBXN7
SE_02_054501140 chr3:196496522-196529504 Sample_02_0545 Bone marrow K562 WT 1140 5 1050 119 0 23 505 RNF168,SMCO1,FBXO45,WDR53,TFRC,UBXN7
SE_02_109900814 chr3:196496958-196529472 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 814 7 1039 119 0 23 505 RNF168,SMCO1,FBXO45,WDR53,TFRC,UBXN7
SE_01_003900593 chr3:196498862-196529549 Sample_01_0039 Haematopoietic and lymphoid tissue bone marrow K562 593 6 980 112 0 23 505 C3ORF43,RNF168,FBXO45,WDR53,SCO1,TFRC,UBXN7
SE_02_103300142 chr3:196599969-196665931 Sample_02_1033 Haematopoietic and lymphoid tissue bone marrow K562 142 17 2173 205 9 154 698 NRROS,LINC01063,FBXO45,CEP19,WDR53,PIGX,UBXN7,RNF168,SMCO1
SE_02_087500238 chr3:196609465-196689219 Sample_02_0875 Peripheral blood Peripheral blood-derived mast cells 238 24 2646 208 11 161 698 NRROS,LINC01063,FBXO45,CEP19,WDR53,PIGX,PAK2,UBXN7,RNF168
Genomic distribution of SEs associated with UBXN7
Genome Browser

The strength of the tissue affected by the gene

Expression of UBXN7

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)