SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000215845
Gene: TSTD1 Gene type: protein_coding
Strand: - External links:
Genomic region: chr1:161037631-161038977 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_054500497 chr1:160990118-161034226 Sample_02_0545 Bone marrow K562 WT 497 13 1156 142 0 78 1186 F11R,ARHGAP30,TSTD1,USF1,ITLN2,PFDN2,USP21,NIT1,DEDD,MPZ,KLHDC9
SE_02_109900376 chr1:160990163-161032686 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 376 16 1107 137 0 70 1186 F11R,ARHGAP30,TSTD1,USF1,ITLN2,PFDN2,USP21,NIT1,DEDD,MPZ,KLHDC9
SE_02_151300686 chr1:160990170-161019878 Sample_02_1513 Lung Transitional AT2->1 cells 686 6 770 97 0 47 953 F11R,TSTD1,USF1,ITLN2,ARHGAP30,LY9,PFDN2,PVRL4,KLHDC9
SE_02_122900386 chr1:160990182-161028856 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 386 22 994 122 0 69 1186 F11R,ARHGAP30,TSTD1,USF1,ITLN2,PFDN2,USP21,NIT1,DEDD,MPZ,KLHDC9
SE_01_003900575 chr1:160990233-161019439 Sample_01_0039 Haematopoietic and lymphoid tissue bone marrow K562 575 8 755 94 0 47 953 F11R,ITLN2,TSTD1,USF1,NIT1
SE_02_151400654 chr1:160990779-161019408 Sample_02_1514 Lung Differentiated AT1-like cells 654 8 740 94 0 47 953 F11R,TSTD1,USF1,ITLN2,ARHGAP30,LY9,PFDN2,PVRL4,KLHDC9
SE_02_153300381 chr1:160994217-161019338 Sample_02_1533 Lung purified primary alveolar epithelial type 2 cells 381 6 663 90 0 47 953 F11R,TSTD1,USF1,ITLN2,ARHGAP30,LY9,PFDN2,PVRL4,KLHDC9
SE_02_151200410 chr1:160995744-161019134 Sample_02_1512 Lung Purified AT2 cells 410 5 616 82 0 47 864 F11R,TSTD1,USF1,ITLN2,ARHGAP30,LY9,PFDN2,PVRL4,KLHDC9
SE_02_083100760 chr1:160996379-161021162 Sample_02_0831 Umblical vein HUVECs_TNF0min 760 14 665 87 0 57 880 F11R,ARHGAP30,TSTD1,USF1,ITLN2,DEDD,USP21
SE_00_002200505 chr1:160997029-161022133 Sample_00_0022 Lung lung_30y 505 6 665 86 0 63 907 F11R,ARHGAP30,ITLN2,TSTD1,USF1,PVRL4
SE_02_153000747 chr1:160997230-161025732 Sample_02_1530 Peripheral blood neutrophils_0BA0X 747 6 747 94 0 63 944 F11R,ARHGAP30,TSTD1,USF1,ITLN2,UFC1
SE_01_010400483 chr1:160997272-161021922 Sample_01_0104 Lung upper lobe of left lung 483 6 655 83 0 63 876 F11R,ARHGAP30,TSTD1,USF1,ITLN2,NIT1,LY9,PFDN2,ITLN1,PVRL4,KLHDC9
SE_00_004900642 chr1:160997616-161019401 Sample_00_0049 Small intestine small intestine 30y 642 9 577 75 0 46 646 F11R,TSTD1,USF1,ITLN2,DEDD,PCP4L1,NIT1,ARHGAP30,LY9,NDUFS2,NR1I3,PFDN2,UFC1,ITLN1,PVRL4
SE_02_152900876 chr1:161011094-161022093 Sample_02_1529 Peripheral blood neutrophils_0BC75 876 1 269 29 0 31 169 F11R,TSTD1,USF1,ARHGAP30,UFC1
SE_02_130800232 chr1:161011937-161021605 Sample_02_1308 Artery Pulmonary artery endothelial cells_caMEK5 232 1 229 23 0 29 155 F11R,TSTD1,USF1,ARHGAP30,DEDD,NDUFS2,NIT1,PFDN2,USP21,UFC1,KLHDC9
SE_02_130900363 chr1:161012049-161021568 Sample_02_1309 Artery Pulmonary artery endothelial cells_Control 363 4 223 23 0 29 153 F11R,TSTD1,USF1,ARHGAP30,DEDD,NDUFS2,NIT1,PFDN2,USP21,UFC1,KLHDC9
SE_01_010700730 chr1:161012574-161023130 Sample_01_0107 Esophagus esophagus squamous epithelium 730 1 242 24 0 30 233 F11R,TSTD1,USF1,ARHGAP30,PVRL4,DEDD,NIT1,SDHC,PFDN2,KLHDC9
SE_00_001100643 chr1:161012885-161022869 Sample_00_0011 Esophagus esophagus 643 3 234 24 0 30 209 F11R,ARHGAP30,TSTD1,USF1,PVRL4
SE_02_087500603 chr1:161041023-161085445 Sample_02_0875 Peripheral blood Peripheral blood-derived mast cells 603 23 1169 113 8 426 3131 PVRL4,USF1,ARHGAP30,DEDD,KLHDC9,NIT1,TSTD1,PFDN2,F11R,PPOX,NDUFS2,B4GALT3,USP21,CD244
SE_02_153000227 chr1:161041104-161073715 Sample_02_1530 Peripheral blood neutrophils_0BA0X 227 10 854 81 7 274 2511 PVRL4,USF1,ARHGAP30,KLHDC9,NIT1,TSTD1,PFDN2,F11R,DEDD
SE_02_152900538 chr1:161065948-161074259 Sample_02_1529 Peripheral blood neutrophils_0BC75 538 1 189 12 1 91 809 PVRL4,ARHGAP30,KLHDC9,USF1,NIT1,TSTD1,PFDN2,F11R,DEDD
SE_02_153100543 chr1:161065980-161073161 Sample_02_1531 Peripheral blood neutrophils_0B9ZK 543 2 162 10 1 79 592 PVRL4,ARHGAP30,KLHDC9,USF1,NIT1,TSTD1,PFDN2,F11R,DEDD
SE_02_092700562 chr1:161066147-161072491 Sample_02_0927 Peripheral blood neutrophils_US 562 2 133 9 1 70 445 PVRL4,ARHGAP30,KLHDC9,USF1,NIT1,TSTD1,PFDN2,F11R,DEDD
SE_01_010700324 chr1:161067420-161097653 Sample_01_0107 Esophagus esophagus squamous epithelium 324 5 774 60 2 317 1494 PVRL4,ARHGAP30,DEDD,KLHDC9,USF1,NIT1,TSTD1,PFDN2,F11R,PCP4L1,PPOX,B4GALT3
Genomic distribution of SEs associated with TSTD1
Genome Browser

The strength of the tissue affected by the gene

Expression of TSTD1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)