SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000126467
Gene: TSKS Gene type: protein_coding
Strand: - External links:
Genomic region: chr19:49739753-49763306 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_04_000100184 chr19:49745376-49781878 Sample_04_0001 Blood heat shocked K562 184 5 1006 65 1 60 1013 AP2A1,TSKS,MIR6799,MED25,FUZ,TBC1D17,IL4I1,PTOV1,SCAF1,ATF5,NUP62
SE_02_158300859 chr19:49756093-49787317 Sample_02_1583 Fetal lung IMR90_empty_GM 859 11 863 63 2 61 786 AP2A1,TSKS,MIR6800,MED25,MIR6799,FUZ
SE_02_109900569 chr19:49760790-49779371 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 569 10 508 38 1 45 461 AP2A1,TSKS,MIR6799,MED25,FUZ,TBC1D17,IL4I1,PTOV1,SCAF1,ATF5,NUP62
SE_02_113000247 chr19:49760968-49791163 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 247 7 835 63 3 61 786 AP2A1,TSKS,MIR6800,MED25,MIR6799,FUZ,TBC1D17,IL4I1,PTOV1,SCAF1,ATF5,NUP62
SE_04_000200624 chr19:49761174-49780033 Sample_04_0002 Blood cold shocked K562 624 2 514 40 1 45 461 AP2A1,TSKS,MIR6799,MED25,FUZ,TBC1D17,IL4I1,PTOV1,SCAF1,ATF5,NUP62
SE_02_054501083 chr19:49761246-49778828 Sample_02_0545 Bone marrow K562 WT 1083 8 488 37 1 45 461 AP2A1,TSKS,MIR6799,MED25,FUZ,TBC1D17,IL4I1,PTOV1,SCAF1,ATF5,NUP62
Genomic distribution of SEs associated with TSKS
Genome Browser

The strength of the tissue affected by the gene

Expression of TSKS

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)