SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000078687
Gene: TNRC6C Gene type: protein_coding
Strand: + External links:
Genomic region: chr17:77959240-78108835 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_152900179 chr17:77855235-77893877 Sample_02_1529 Peripheral blood neutrophils_0BC75 179 8 1317 53 1 34 1015 FLJ45079,TNRC6C,TMC6,TMC8
SE_02_153000205 chr17:77859927-77893091 Sample_02_1530 Peripheral blood neutrophils_0BA0X 205 7 1123 49 0 30 1015 FLJ45079,TNRC6C,TMC6,TMC8
SE_02_153100131 chr17:77863962-77892195 Sample_02_1531 Peripheral blood neutrophils_0B9ZK 131 8 949 39 0 25 1015 FLJ45079,TNRC6C,TMC6,TMC8
SE_04_000200776 chr17:78015936-78063149 Sample_04_0002 Blood cold shocked K562 776 7 1296 53 11 164 566 TNRC6C,TNRC6C-AS1,SYNGR2,TMC6,TMC8,C17orf99
SE_04_000100870 chr17:78016064-78063079 Sample_04_0001 Blood heat shocked K562 870 8 1293 53 11 164 566 TNRC6C,TNRC6C-AS1,SYNGR2,TMC6,TMC8,C17orf99
SE_02_120500181 chr17:78037296-78129969 Sample_02_1205 Brain NB3 181 36 2836 152 13 149 5098 TMC6,TNRC6C,TNRC6C-AS1,C17ORF99,TMC8,SYNGR2,AFMID,TMEM235
SE_02_120400955 chr17:78110768-78118382 Sample_02_1204 Brain NB2 955 1 336 8 1 0 749 TMC6,TNRC6C-AS1,C17ORF99,TMC8,TNRC6C,AFMID,TMEM235,SYNGR2
SE_02_100500205 chr17:78113954-78126489 Sample_02_1005 Brain Lateral temporal lobe_11T_Old 205 8 576 25 1 0 1701 TMC6,C17ORF99,TNRC6C-AS1,TMC8,SYNGR2,TNRC6C,AFMID,TK1
SE_02_100000329 chr17:78114157-78126726 Sample_02_1000 Brain Lateral temporal lobe_15T_Young 329 9 577 25 1 0 1755 TMC6,C17ORF99,TNRC6C-AS1,TMC8,SYNGR2,TNRC6C,AFMID,TK1
SE_02_100300090 chr17:78114741-78125781 Sample_02_1003 Brain Lateral temporal lobe_19T_Young 90 5 514 21 0 0 1514 TMC6,C17ORF99,TNRC6C-AS1,TMC8,SYNGR2,TNRC6C,AFMID,TK1
SE_02_121800038 chr17:78227267-78289893 Sample_02_1218 Bone marrow Daudi 38 26 1992 142 6 0 2276 TMEM235,LOC100996291,AFMID,TK1,BIRC5,TNRC6C,C17orf99,SYNGR2,TMC6,TMC8
Genomic distribution of SEs associated with TNRC6C
Genome Browser

The strength of the tissue affected by the gene

Expression of TNRC6C

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)