SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000101470
Gene: TNNC2 Gene type: protein_coding
Strand: - External links:
Genomic region: chr20:45823214-45833745 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_087901222 chr20:45771419-45782932 Sample_02_0879 Ovary SVOG3e cells_Dox_12h_control 1222 2 266 40 4 14 303 WFDC3,DNTTIP1,TNNC2,UBE2C,SPINT4,CTSA,PLTP,ACOT8,ZNF335,SNX21,ZSWIM1,ZSWIM3
SE_02_088200899 chr20:45771483-45782596 Sample_02_0882 Ovary SVOG3e_cells_noDox_transduced with V5-FOXL2 C134W 899 3 252 38 4 14 303 WFDC3,DNTTIP1,TNNC2,UBE2C,SPINT4,CTSA,PLTP,ACOT8,ZNF335,SNX21,ZSWIM1,ZSWIM3
SE_02_088301061 chr20:45777332-45783264 Sample_02_0883 Ovary SVOG3e_cells_Dox_12h_transduced with V5-FOXL2 C134W 1061 1 130 24 0 2 55 WFDC3,DNTTIP1,UBE2C,TNNC2,CTSA,PLTP,ACOT8,ZNF335,SNX21,ZSWIM1,ZSWIM3,SPINT4
SE_02_087801333 chr20:45777687-45782358 Sample_02_0878 Ovary SVOG3e cells_noDox_control 1333 1 91 18 0 0 52 WFDC3,DNTTIP1,UBE2C,TNNC2,CTSA,PLTP,ACOT8,ZNF335,SNX21,ZSWIM1,ZSWIM3,SPINT4
SE_02_088001224 chr20:45777697-45782410 Sample_02_0880 Ovary SVOG3e cells_noDox_transduced_V5-FOXL2_WT 1224 1 92 18 0 0 52 WFDC3,DNTTIP1,UBE2C,TNNC2,CTSA,PLTP,ACOT8,ZNF335,SNX21,ZSWIM1,ZSWIM3,SPINT4
Genomic distribution of SEs associated with TNNC2
Genome Browser

The strength of the tissue affected by the gene

Expression of TNNC2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)