SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000167895
Gene: TMC8 Gene type: protein_coding
Strand: + External links:
Genomic region: chr17:78130770-78142968 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_152900179 chr17:77855235-77893877 Sample_02_1529 Peripheral blood neutrophils_0BC75 179 8 1317 53 1 34 1015 FLJ45079,TNRC6C,TMC6,TMC8
SE_02_153000205 chr17:77859927-77893091 Sample_02_1530 Peripheral blood neutrophils_0BA0X 205 7 1123 49 0 30 1015 FLJ45079,TNRC6C,TMC6,TMC8
SE_02_153100131 chr17:77863962-77892195 Sample_02_1531 Peripheral blood neutrophils_0B9ZK 131 8 949 39 0 25 1015 FLJ45079,TNRC6C,TMC6,TMC8
SE_04_000200776 chr17:78015936-78063149 Sample_04_0002 Blood cold shocked K562 776 7 1296 53 11 164 566 TNRC6C,TNRC6C-AS1,SYNGR2,TMC6,TMC8,C17orf99
SE_04_000100870 chr17:78016064-78063079 Sample_04_0001 Blood heat shocked K562 870 8 1293 53 11 164 566 TNRC6C,TNRC6C-AS1,SYNGR2,TMC6,TMC8,C17orf99
SE_02_059100394 chr17:78120911-78140449 Sample_02_0591 PBMCs adult CD4+CD25-CD45RA+CD27+ naive T cells 394 11 741 62 0 0 3138 TMC8,TMC6,C17ORF99,AFMID,TK1,TNRC6C-AS1,SYNGR2
SE_02_059300395 chr17:78121372-78140947 Sample_02_0593 Fetal spleenocytes fetal naive T cells 395 6 746 60 0 0 3093 TMC8,TMC6,C17ORF99,AFMID,TK1,TNRC6C-AS1,SYNGR2,BIRC5,SOCS3
SE_00_005500597 chr17:78124170-78133070 Sample_00_0055 Spleen spleen 34y 597 1 317 21 0 0 1629 TMC8,TMC6,C17ORF99,TNRC6C-AS1,SYNGR2,AFMID,BIRC5,TK1,SOCS3
SE_02_121800489 chr17:78126930-78132944 Sample_02_1218 Bone marrow Daudi 489 1 188 17 0 0 875 TMC8,TMC6,C17ORF99,TNRC6C-AS1,SYNGR2,BIRC5,TK1
SE_02_121800038 chr17:78227267-78289893 Sample_02_1218 Bone marrow Daudi 38 26 1992 142 6 0 2276 TMEM235,LOC100996291,AFMID,TK1,BIRC5,TNRC6C,C17orf99,SYNGR2,TMC6,TMC8
SE_02_094600106 chr17:78294341-78357440 Sample_02_0946 Tongue HN12 106 12 2066 27 3 233 140 SOCS3,LOC100996291,LOC101928674,PGS1,AFMID,BIRC5,TK1,SYNGR2,TMC8
SE_02_094700095 chr17:78300927-78360112 Sample_02_0947 Tongue Cal27 95 13 1873 24 3 288 755 SOCS3,LOC100996291,LOC101928674,PGS1,AFMID,BIRC5,TK1,SYNGR2,TMC8
SE_02_046500199 chr17:78306764-78360099 Sample_02_0465 Adipose subcutaneous adipocytes 199 19 1670 18 3 279 750 SOCS3,LOC100996291,LOC101928674,PGS1,AFMID,BIRC5,TK1,TMC8
SE_01_011700015 chr17:78313634-78360060 Sample_01_0117 Lung fibroblast of lung 15 16 1434 16 2 279 743 SOCS3,LOC100996291,LOC101928674,PGS1,TMC6,AFMID,BIRC5,TK1,SYNGR2,TMC8
Genomic distribution of SEs associated with TMC8
Genome Browser

The strength of the tissue affected by the gene

Expression of TMC8

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)