Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000141524
Gene: TMC6 Gene type: protein_coding
Strand: - External links:
Genomic region: chr17:78107397-78132407 Genome Browser:

Super-enhancer search result of gene-based

SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_152900179 chr17:77855235-77893877 Sample_02_1529 Peripheral blood neutrophils_0BC75 179 8 1317 53 1 34 1015 FLJ45079,TNRC6C,TMC6,TMC8
SE_02_153000205 chr17:77859927-77893091 Sample_02_1530 Peripheral blood neutrophils_0BA0X 205 7 1123 49 0 30 1015 FLJ45079,TNRC6C,TMC6,TMC8
SE_02_153100131 chr17:77863962-77892195 Sample_02_1531 Peripheral blood neutrophils_0B9ZK 131 8 949 39 0 25 1015 FLJ45079,TNRC6C,TMC6,TMC8
SE_04_000200776 chr17:78015936-78063149 Sample_04_0002 Blood cold shocked K562 776 7 1296 53 11 164 566 TNRC6C,TNRC6C-AS1,SYNGR2,TMC6,TMC8,C17orf99
SE_04_000100870 chr17:78016064-78063079 Sample_04_0001 Blood heat shocked K562 870 8 1293 53 11 164 566 TNRC6C,TNRC6C-AS1,SYNGR2,TMC6,TMC8,C17orf99
SE_02_120500181 chr17:78037296-78129969 Sample_02_1205 Brain NB3 181 36 2836 152 13 149 5098 TMC6,TNRC6C,TNRC6C-AS1,C17ORF99,TMC8,SYNGR2,AFMID,TMEM235
SE_02_120400955 chr17:78110768-78118382 Sample_02_1204 Brain NB2 955 1 336 8 1 0 749 TMC6,TNRC6C-AS1,C17ORF99,TMC8,TNRC6C,AFMID,TMEM235,SYNGR2
SE_02_100500205 chr17:78113954-78126489 Sample_02_1005 Brain Lateral temporal lobe_11T_Old 205 8 576 25 1 0 1701 TMC6,C17ORF99,TNRC6C-AS1,TMC8,SYNGR2,TNRC6C,AFMID,TK1
SE_02_100000329 chr17:78114157-78126726 Sample_02_1000 Brain Lateral temporal lobe_15T_Young 329 9 577 25 1 0 1755 TMC6,C17ORF99,TNRC6C-AS1,TMC8,SYNGR2,TNRC6C,AFMID,TK1
SE_02_100300090 chr17:78114741-78125781 Sample_02_1003 Brain Lateral temporal lobe_19T_Young 90 5 514 21 0 0 1514 TMC6,C17ORF99,TNRC6C-AS1,TMC8,SYNGR2,TNRC6C,AFMID,TK1
SE_02_059100394 chr17:78120911-78140449 Sample_02_0591 PBMCs adult CD4+CD25-CD45RA+CD27+ naive T cells 394 11 741 62 0 0 3138 TMC8,TMC6,C17ORF99,AFMID,TK1,TNRC6C-AS1,SYNGR2
SE_02_059300395 chr17:78121372-78140947 Sample_02_0593 Fetal spleenocytes fetal naive T cells 395 6 746 60 0 0 3093 TMC8,TMC6,C17ORF99,AFMID,TK1,TNRC6C-AS1,SYNGR2,BIRC5,SOCS3
SE_00_005500597 chr17:78124170-78133070 Sample_00_0055 Spleen spleen 34y 597 1 317 21 0 0 1629 TMC8,TMC6,C17ORF99,TNRC6C-AS1,SYNGR2,AFMID,BIRC5,TK1,SOCS3
SE_02_121800489 chr17:78126930-78132944 Sample_02_1218 Bone marrow Daudi 489 1 188 17 0 0 875 TMC8,TMC6,C17ORF99,TNRC6C-AS1,SYNGR2,BIRC5,TK1
SE_02_121800038 chr17:78227267-78289893 Sample_02_1218 Bone marrow Daudi 38 26 1992 142 6 0 2276 TMEM235,LOC100996291,AFMID,TK1,BIRC5,TNRC6C,C17orf99,SYNGR2,TMC6,TMC8
SE_02_059300251 chr17:78251007-78273527 Sample_02_0593 Fetal spleenocytes fetal naive T cells 251 7 730 50 0 0 1061 LOC100996291,TMEM235,BIRC5,TMC6,SOCS3,SYNGR2,PGS1
SE_02_085900082 chr17:78294000-78358648 Sample_02_0859 Prostate PC3 82 9 2116 29 3 254 425 SOCS3,LOC100996291,LOC101928674,PGS1,AFMID,BIRC5,SYNGR2,TMC6
SE_02_127600071 chr17:78294092-78357710 Sample_02_1276 Prostate PC3_GSK126 71 25 2079 27 3 233 192 SOCS3,LOC100996291,LOC101928674,PGS1,AFMID,BIRC5,SYNGR2,TMC6
SE_01_011700015 chr17:78313634-78360060 Sample_01_0117 Lung fibroblast of lung 15 16 1434 16 2 279 743 SOCS3,LOC100996291,LOC101928674,PGS1,TMC6,AFMID,BIRC5,TK1,SYNGR2,TMC8
SE_02_102400091 chr17:78313641-78343650 Sample_02_1024 Prostate PC3 cells 91 10 959 10 2 110 0 LOC100996291,LOC101928674,PGS1,SOCS3,AFMID,BIRC5,SYNGR2,TMC6
SE_02_127500213 chr17:78313880-78357973 Sample_02_1275 Prostate PC3_Vorinostat 213 27 1376 15 2 225 269 SOCS3,LOC100996291,LOC101928674,PGS1,AFMID,BIRC5,SYNGR2,TMC6
SE_02_127400058 chr17:78313965-78356891 Sample_02_1274 Prostate PC3_DMSO 58 22 1347 13 2 221 37 SOCS3,LOC100996291,LOC101928674,PGS1,AFMID,BIRC5,SYNGR2,TMC6
SE_02_072500404 chr17:78329337-78353431 Sample_02_0725 Mammary gland MCF10A-YAP5SA_ctrl 404 9 712 6 1 141 0 LOC101928674,PGS1,SOCS3,TMC6,AFMID,C17orf99,TK1
SE_02_072600260 chr17:78329340-78354066 Sample_02_0726 Mammary gland MCF10A-YAP5SA_plusDOX 260 10 731 6 1 142 0 LOC101928674,PGS1,SOCS3,TMC6,AFMID,C17orf99,TK1
SE_02_100100106 chr17:78341570-78353293 Sample_02_1001 Brain Lateral temporal lobe_17T_Young 106 2 319 1 1 110 0 LOC101928674,PGS1,SOCS3,TMC6
SE_02_100400163 chr17:78342932-78353870 Sample_02_1004 Brain Lateral temporal lobe_10T_Old 163 3 306 1 0 92 0 LOC101928674,PGS1,SOCS3,TMC6
SE_02_046500317 chr17:78374648-78448757 Sample_02_0465 Adipose subcutaneous adipocytes 317 23 2898 301 14 234 2713 DNAH17,PGS1,LOC101928674,DNAH17-AS1,SOCS3,TMC6,SYNGR2
SE_02_087500642 chr17:78377731-78388783 Sample_02_0875 Peripheral blood Peripheral blood-derived mast cells 642 1 424 33 3 38 148 PGS1,LOC101928674,SOCS3,TMC6
SE_00_005500534 chr17:78383226-78390846 Sample_00_0055 Spleen spleen 34y 534 1 296 33 2 22 0 PGS1,LOC101928674,SOCS3,TMC6
SE_00_005500357 chr17:78410727-78424400 Sample_00_0055 Spleen spleen 34y 357 3 540 34 0 39 720 DNAH17,PGS1,LOC101928674,TMC6,SOCS3

Genomic distribution of SEs associated with TMC6

The strength of the tissue affected by the gene


Expression of TMC6