SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000171992
Gene: SYNPO Gene type: protein_coding
Strand: + External links:
Genomic region: chr5:150601080-150659207 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_092900791 chr5:150458747-150501999 Sample_02_0929 Mid-gestation placenta trophoblast__CytT 791 16 1210 101 1 147 108 LOC102546298,NDST1,CD74,RPS14,SYNPO,ARSI
SE_00_002900111 chr5:150462674-150530321 Sample_00_0029 Ovary ovary 111 23 1955 133 1 262 640 NDST1,CD74,RPS14,SYNPO
SE_02_088200159 chr5:150464329-150518562 Sample_02_0882 Ovary SVOG3e_cells_noDox_transduced with V5-FOXL2 C134W 159 11 1533 109 0 180 220 NDST1,LOC102546298,RPS14,SYNPO
SE_02_087800739 chr5:150464377-150492708 Sample_02_0878 Ovary SVOG3e cells_noDox_control 739 5 780 67 0 101 0 LOC102546298,RPS14,NDST1,SYNPO
SE_02_088100719 chr5:150464408-150492708 Sample_02_0881 Ovary SVOG3e cells_Dox_12h_transduced_V5-FOXL2_WT 719 7 777 66 0 101 0 LOC102546298,RPS14,NDST1,SYNPO
SE_02_088300199 chr5:150464416-150518575 Sample_02_0883 Ovary SVOG3e_cells_Dox_12h_transduced with V5-FOXL2 C134W 199 12 1529 108 0 180 220 NDST1,LOC102546298,RPS14,SYNPO
SE_02_087900280 chr5:150464460-150523201 Sample_02_0879 Ovary SVOG3e cells_Dox_12h_control 280 10 1684 112 1 219 489 NDST1,LOC102546298,RPS14,SYNPO
SE_01_011500114 chr5:150468973-150518486 Sample_01_0115 Skeletal Muscle myotube originated from skeletal muscle myoblast 114 14 1389 91 0 169 220 NDST1,LOC102546298,RPS14,SYNPO,ARSI
SE_02_093000410 chr5:150470184-150502078 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 410 27 886 67 0 122 108 LOC102546298,NDST1,RPS14,CD74,SYNPO,ARSI
SE_02_090100174 chr5:150483090-150543524 Sample_02_0901 Heart left ventricle_LV1471 174 30 1727 109 2 284 1359 NDST1,LOC102546298,RPS14,SYNPO
SE_02_088900026 chr5:150585638-150659412 Sample_02_0889 Heart left ventricle_LV1183 26 22 2110 132 3 460 2227 SYNPO,MYOZ3,RBM22,RPS14
SE_02_089100016 chr5:150585799-150675242 Sample_02_0891 Heart left ventricle_LV1202 16 30 2549 180 4 497 2930 SYNPO,MYOZ3,RBM22,RPS14
SE_02_089600026 chr5:150585901-150674915 Sample_02_0896 Heart left ventricle_LV1294 26 33 2537 180 4 497 2930 SYNPO,MYOZ3,RBM22,RPS14
SE_01_009800019 chr5:150585933-150675050 Sample_01_0098 Heart left ventricle_51y 19 17 2539 180 4 496 2930 SYNPO,MYOZ3,RBM22,RPS14
SE_00_004600015 chr5:150586055-150658607 Sample_00_0046 Heart right ventricle_34y 15 47 2079 130 3 459 2080 SYNPO,MYOZ3,RBM22,RPS14
SE_02_090100039 chr5:150586206-150659384 Sample_02_0901 Heart left ventricle_LV1471 39 32 2092 131 3 457 2223 SYNPO,MYOZ3,RBM22,RPS14
SE_02_088800015 chr5:150589588-150674825 Sample_02_0888 Heart left ventricle_LV1160 15 27 2423 173 4 488 2930 SYNPO,MYOZ3,RBM22,RPS14
SE_02_089200015 chr5:150589745-150675262 Sample_02_0892 Heart left ventricle_LV1215 15 28 2433 174 4 488 2930 SYNPO,MYOZ3,RBM22,RPS14
SE_02_090200028 chr5:150589862-150659017 Sample_02_0902 Heart left ventricle_LV1558 28 28 1975 126 3 451 2160 SYNPO,MYOZ3,RBM22,RPS14
SE_02_089800039 chr5:150589992-150659452 Sample_02_0898 Heart left ventricle_LV1356 39 21 1984 126 3 451 2233 SYNPO,MYOZ3,RBM22,RPS14
SE_02_089000019 chr5:150590036-150658855 Sample_02_0890 Heart left ventricle_LV1200 19 29 1968 126 3 448 2128 SYNPO,MYOZ3,RBM22,RPS14
SE_00_005200015 chr5:150590099-150659031 Sample_00_0052 Heart left ventricle 3y 15 36 1966 126 3 440 2161 SYNPO,MYOZ3,RBM22,RPS14
SE_01_010400275 chr5:150590122-150657297 Sample_01_0104 Lung upper lobe of left lung 275 24 1918 123 3 428 1840 SYNPO,MYOZ3,RBM22,NDST1,CCDC69
SE_02_090000035 chr5:150590134-150659361 Sample_02_0900 Heart left ventricle_LV1452 35 27 1972 126 3 439 2221 SYNPO,MYOZ3,RBM22,RPS14
SE_02_089500014 chr5:150590156-150658661 Sample_02_0895 Heart left ventricle_LV1259 14 29 1960 126 3 439 2090 SYNPO,MYOZ3,RBM22,RPS14
SE_02_089900034 chr5:150590166-150658525 Sample_02_0899 Heart left ventricle_LV1400 34 43 1954 125 3 439 2069 SYNPO,MYOZ3,RBM22,RPS14
SE_02_089300022 chr5:150590188-150659435 Sample_02_0893 Heart left ventricle_LV1226 22 25 1975 126 3 440 2233 SYNPO,MYOZ3,RBM22,RPS14
SE_00_005500424 chr5:150590215-150657267 Sample_00_0055 Spleen spleen 34y 424 18 1913 123 3 427 1836 SYNPO,MYOZ3,RBM22
SE_02_088700021 chr5:150590241-150675236 Sample_02_0887 Heart left ventricle_LV1121 21 25 2413 174 4 475 2930 SYNPO,MYOZ3,RBM22,RPS14
SE_02_112900105 chr5:150591309-150657637 Sample_02_1129 Adipose visceral adipose_CTL_HCTR13 105 29 1908 122 3 427 1892 SYNPO,MYOZ3,RBM22,CD74,CCDC69
SE_02_089700045 chr5:150593904-150659273 Sample_02_0897 Heart left ventricle_LV1325 45 29 1874 114 3 433 2198 SYNPO,MYOZ3,RBM22,RPS14
SE_00_005700016 chr5:150595379-150658512 Sample_00_0057 Heart right ventricle 3y 16 51 1828 110 3 428 2063 SYNPO,MYOZ3,RBM22,RPS14
SE_02_089400013 chr5:150595407-150658789 Sample_02_0894 Heart left ventricle_LV1248 13 19 1835 111 3 429 2120 SYNPO,MYOZ3,RBM22,RPS14
SE_02_108200568 chr5:150610070-150658043 Sample_02_1082 Retina retina 568 16 1309 82 3 339 1843 SYNPO,MYOZ3,RBM22,RPS14
SE_02_158200090 chr5:150617797-150645211 Sample_02_1582 Renal OS-RC-2 90 9 760 53 3 151 339 SYNPO,MYOZ3,DCTN4,NDST1,RBM22
SE_02_088301330 chr5:150619592-150645741 Sample_02_0883 Ovary SVOG3e_cells_Dox_12h_transduced with V5-FOXL2 C134W 1330 6 703 41 2 151 123 SYNPO,MYOZ3,RBM22
SE_02_088201293 chr5:150621732-150645380 Sample_02_0882 Ovary SVOG3e_cells_noDox_transduced with V5-FOXL2 C134W 1293 7 636 34 1 140 123 SYNPO,MYOZ3,RBM22
SE_02_094700768 chr5:150624665-150643387 Sample_02_0947 Tongue Cal27 768 2 500 29 0 109 123 SYNPO,MYOZ3,RBM22
SE_02_087500054 chr5:150729665-150798794 Sample_02_0875 Peripheral blood Peripheral blood-derived mast cells 54 23 1800 192 8 135 937 SMIM3,DCTN4,IRGM,RBM22,SYNPO,ZNF300
SE_02_062200036 chr5:150759215-150798599 Sample_02_0622 Blood EOL1_Naive 36 8 999 119 7 88 514 SMIM3,DCTN4,IRGM,SYNPO,ZNF300,TNIP1,RBM22
SE_02_153200346 chr5:150762174-150802014 Sample_02_1532 Mammary gland MCF10A 346 5 985 117 6 81 507 SMIM3,DCTN4,IRGM,SYNPO,RBM22
SE_00_005501031 chr5:150762241-150801580 Sample_00_0055 Spleen spleen 34y 1031 7 976 116 6 81 507 SMIM3,DCTN4,IRGM,SYNPO,RBM22
SE_01_011500531 chr5:150777865-150790976 Sample_01_0115 Skeletal Muscle myotube originated from skeletal muscle myoblast 531 4 336 49 3 41 256 SMIM3,DCTN4,SYNPO,RBM22
Genomic distribution of SEs associated with SYNPO
Genome Browser

The strength of the tissue affected by the gene

Expression of SYNPO

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)