SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000108639
Gene: SYNGR2 Gene type: protein_coding
Strand: + External links:
Genomic region: chr17:78168581-78173527 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_04_000200776 chr17:78015936-78063149 Sample_04_0002 Blood cold shocked K562 776 7 1296 53 11 164 566 TNRC6C,TNRC6C-AS1,SYNGR2,TMC6,TMC8,C17orf99
SE_04_000100870 chr17:78016064-78063079 Sample_04_0001 Blood heat shocked K562 870 8 1293 53 11 164 566 TNRC6C,TNRC6C-AS1,SYNGR2,TMC6,TMC8,C17orf99
SE_02_120500181 chr17:78037296-78129969 Sample_02_1205 Brain NB3 181 36 2836 152 13 149 5098 TMC6,TNRC6C,TNRC6C-AS1,C17ORF99,TMC8,SYNGR2,AFMID,TMEM235
SE_02_120400955 chr17:78110768-78118382 Sample_02_1204 Brain NB2 955 1 336 8 1 0 749 TMC6,TNRC6C-AS1,C17ORF99,TMC8,TNRC6C,AFMID,TMEM235,SYNGR2
SE_02_100500205 chr17:78113954-78126489 Sample_02_1005 Brain Lateral temporal lobe_11T_Old 205 8 576 25 1 0 1701 TMC6,C17ORF99,TNRC6C-AS1,TMC8,SYNGR2,TNRC6C,AFMID,TK1
SE_02_100000329 chr17:78114157-78126726 Sample_02_1000 Brain Lateral temporal lobe_15T_Young 329 9 577 25 1 0 1755 TMC6,C17ORF99,TNRC6C-AS1,TMC8,SYNGR2,TNRC6C,AFMID,TK1
SE_02_100300090 chr17:78114741-78125781 Sample_02_1003 Brain Lateral temporal lobe_19T_Young 90 5 514 21 0 0 1514 TMC6,C17ORF99,TNRC6C-AS1,TMC8,SYNGR2,TNRC6C,AFMID,TK1
SE_02_059300395 chr17:78121372-78140947 Sample_02_0593 Fetal spleenocytes fetal naive T cells 395 6 746 60 0 0 3093 TMC8,TMC6,C17ORF99,AFMID,TK1,TNRC6C-AS1,SYNGR2,BIRC5,SOCS3
SE_00_005500597 chr17:78124170-78133070 Sample_00_0055 Spleen spleen 34y 597 1 317 21 0 0 1629 TMC8,TMC6,C17ORF99,TNRC6C-AS1,SYNGR2,AFMID,BIRC5,TK1,SOCS3
SE_02_121800038 chr17:78227267-78289893 Sample_02_1218 Bone marrow Daudi 38 26 1992 142 6 0 2276 TMEM235,LOC100996291,AFMID,TK1,BIRC5,TNRC6C,C17orf99,SYNGR2,TMC6,TMC8
SE_02_087500103 chr17:78242323-78292840 Sample_02_0875 Peripheral blood Peripheral blood-derived mast cells 103 9 1611 96 3 0 1181 LOC100996291,TMEM235,BIRC5,SOCS3,SYNGR2,PGS1
SE_01_003900310 chr17:78246895-78302023 Sample_01_0039 Haematopoietic and lymphoid tissue bone marrow K562 310 13 1816 95 3 9 1181 BIRC5,LOC283999,EPR1,PGS1,SOCS3,SYNGR2
SE_02_059300251 chr17:78251007-78273527 Sample_02_0593 Fetal spleenocytes fetal naive T cells 251 7 730 50 0 0 1061 LOC100996291,TMEM235,BIRC5,TMC6,SOCS3,SYNGR2,PGS1
SE_02_054500106 chr17:78251175-78342465 Sample_02_0545 Bone marrow K562 WT 106 17 2996 97 4 114 1181 LOC100996291,BIRC5,PGS1,LOC101928674,TMEM235,SOCS3,SYNGR2
SE_02_085900082 chr17:78294000-78358648 Sample_02_0859 Prostate PC3 82 9 2116 29 3 254 425 SOCS3,LOC100996291,LOC101928674,PGS1,AFMID,BIRC5,SYNGR2,TMC6
SE_02_127600071 chr17:78294092-78357710 Sample_02_1276 Prostate PC3_GSK126 71 25 2079 27 3 233 192 SOCS3,LOC100996291,LOC101928674,PGS1,AFMID,BIRC5,SYNGR2,TMC6
SE_02_094600106 chr17:78294341-78357440 Sample_02_0946 Tongue HN12 106 12 2066 27 3 233 140 SOCS3,LOC100996291,LOC101928674,PGS1,AFMID,BIRC5,TK1,SYNGR2,TMC8
SE_02_094700095 chr17:78300927-78360112 Sample_02_0947 Tongue Cal27 95 13 1873 24 3 288 755 SOCS3,LOC100996291,LOC101928674,PGS1,AFMID,BIRC5,TK1,SYNGR2,TMC8
SE_02_088000846 chr17:78300999-78355897 Sample_02_0880 Ovary SVOG3e cells_noDox_transduced_V5-FOXL2_WT 846 11 1753 20 3 210 0 LOC100996291,LOC101928674,PGS1,SOCS3,BIRC5,TMEM235,TIMP2,TK1,SYNGR2
SE_02_087900870 chr17:78301038-78354157 Sample_02_0879 Ovary SVOG3e cells_Dox_12h_control 870 11 1684 19 3 206 0 LOC100996291,LOC101928674,PGS1,SOCS3,BIRC5,TMEM235,TIMP2,TK1,SYNGR2
SE_02_088300600 chr17:78308697-78355524 Sample_02_0883 Ovary SVOG3e_cells_Dox_12h_transduced with V5-FOXL2 C134W 600 12 1472 14 2 198 0 LOC100996291,LOC101928674,PGS1,SOCS3,BIRC5,TMEM235,TIMP2,TK1,SYNGR2
SE_02_088200603 chr17:78309160-78357314 Sample_02_0882 Ovary SVOG3e_cells_noDox_transduced with V5-FOXL2 C134W 603 10 1523 15 2 224 109 SOCS3,LOC100996291,LOC101928674,PGS1,BIRC5,TMEM235,TIMP2,TK1,SYNGR2
SE_02_087800907 chr17:78309196-78357314 Sample_02_0878 Ovary SVOG3e cells_noDox_control 907 12 1523 15 2 224 109 SOCS3,LOC100996291,LOC101928674,PGS1,BIRC5,TMEM235,TIMP2,TK1,SYNGR2
SE_02_088100696 chr17:78309234-78355999 Sample_02_0881 Ovary SVOG3e cells_Dox_12h_transduced_V5-FOXL2_WT 696 9 1482 14 2 201 0 LOC100996291,LOC101928674,PGS1,SOCS3,BIRC5,TMEM235,TIMP2,TK1,SYNGR2
SE_01_011700015 chr17:78313634-78360060 Sample_01_0117 Lung fibroblast of lung 15 16 1434 16 2 279 743 SOCS3,LOC100996291,LOC101928674,PGS1,TMC6,AFMID,BIRC5,TK1,SYNGR2,TMC8
SE_02_102400091 chr17:78313641-78343650 Sample_02_1024 Prostate PC3 cells 91 10 959 10 2 110 0 LOC100996291,LOC101928674,PGS1,SOCS3,AFMID,BIRC5,SYNGR2,TMC6
SE_02_094900840 chr17:78313779-78358378 Sample_02_0949 Umbilical artery HUAEC_WT 840 20 1391 15 2 229 353 SOCS3,LOC100996291,LOC101928674,PGS1,AFMID,BIRC5,TK1,SYNGR2
SE_02_127500213 chr17:78313880-78357973 Sample_02_1275 Prostate PC3_Vorinostat 213 27 1376 15 2 225 269 SOCS3,LOC100996291,LOC101928674,PGS1,AFMID,BIRC5,SYNGR2,TMC6
SE_02_127400058 chr17:78313965-78356891 Sample_02_1274 Prostate PC3_DMSO 58 22 1347 13 2 221 37 SOCS3,LOC100996291,LOC101928674,PGS1,AFMID,BIRC5,SYNGR2,TMC6
SE_02_046500317 chr17:78374648-78448757 Sample_02_0465 Adipose subcutaneous adipocytes 317 23 2898 301 14 234 2713 DNAH17,PGS1,LOC101928674,DNAH17-AS1,SOCS3,TMC6,SYNGR2
SE_02_151200223 chr17:78375544-78417760 Sample_02_1512 Lung Purified AT2 cells 223 11 1476 135 12 139 859 PGS1,LOC101928674,SOCS3,SYNGR2
SE_01_010400637 chr17:78410813-78420824 Sample_01_0104 Lung upper lobe of left lung 637 1 361 21 0 29 380 PGS1,LOC101928674,SOCS3,SYNGR2
Genomic distribution of SEs associated with SYNGR2
Genome Browser

The strength of the tissue affected by the gene

Expression of SYNGR2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)