SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000161860
Gene: SYCE2 Gene type: protein_coding
Strand: - External links:
Genomic region: chr19:12898786-12919293 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_00_003100155 chr19:12774426-12795101 Sample_00_0031 Placenta placenta 155 3 475 36 1 335 808 JUNB,HOOK2,ASNA1,RNASEH2A,PRDX2,RTBDN,C19ORF43,MAST1,BEST2,C19orf43,FARSA,SYCE2
SE_00_004500541 chr19:12777569-12794592 Sample_00_0045 Thymus thymus 541 3 389 33 1 305 517 JUNB,ASNA1,HOOK2,RNASEH2A,PRDX2,RTBDN,C19ORF43,MAST1,BEST2,C19orf43,CALR,DAND5,DHPS,DNASE2,FARSA,FBXW9,GCDH,AN2B1,AST1,SYCE2,TNPO2,WDR83,WDR83OS,ZNF490,ZNF709
SE_01_011700009 chr19:12983260-13079563 Sample_01_0117 Lung fibroblast of lung 9 25 2376 103 4 990 1028 NFIX,FARSA,DAND5,MIR6515,RAD23A,GADD45GIP1,CALR,LYL1,TRMT1,NACC1,SYCE2,IER2
SE_01_010400032 chr19:12995828-13064709 Sample_01_0104 Lung upper lobe of left lung 32 26 1666 77 3 725 407 NFIX,DAND5,GADD45GIP1,LYL1,SYCE2,TRMT1,RAD23A,CALR,FARSA,IER2
SE_02_151300077 chr19:12997728-13057782 Sample_02_1513 Lung Transitional AT2->1 cells 77 20 1484 64 1 663 331 NFIX,DAND5,GADD45GIP1,LYL1,SYCE2,TRMT1,RAD23A,CALR,FARSA,IER2
SE_02_151400018 chr19:12997963-13060671 Sample_02_1514 Lung Differentiated AT1-like cells 18 23 1524 68 2 666 331 NFIX,DAND5,GADD45GIP1,LYL1,SYCE2,TRMT1,RAD23A,CALR,FARSA,IER2
SE_02_153300055 chr19:13005092-13056292 Sample_02_1533 Lung purified primary alveolar epithelial type 2 cells 55 22 1183 48 1 590 331 NFIX,DAND5,GADD45GIP1,LYL1,SYCE2,TRMT1,RAD23A,CALR,FARSA,IER2
SE_02_151200059 chr19:13007339-13056317 Sample_02_1512 Lung Purified AT2 cells 59 27 1125 42 1 549 331 NFIX,LYL1,DAND5,SYCE2,TRMT1,RAD23A,CALR,FARSA,IER2
SE_02_084100278 chr19:13138316-13188266 Sample_02_0841 Blood THP-1_untr 278 14 1500 72 2 127 2080 NACC1,IER2,STX10,LYL1,TRMT1,SYCE2,RAD23A,DNASE2,FARSA,GADD45GIP1,DAND5
SE_02_073900471 chr19:13139576-13182352 Sample_02_0739 Blood Nalm6 471 9 1146 64 2 120 1745 NACC1,IER2,STX10,LYL1,TRMT1,SYCE2,NFIX,FARSA,GADD45GIP1,DAND5
SE_02_088500074 chr19:13140770-13211678 Sample_02_0885 Blood NALM6_2 74 8 2086 88 2 175 2280 NACC1,IER2,CACNA1A,STX10,LYL1,TRMT1,SYCE2,NFIX,FARSA,GADD45GIP1,DAND5
SE_02_057300410 chr19:13140944-13182343 Sample_02_0573 Blood Nalm6_1 410 9 1112 61 2 116 1340 NACC1,IER2,STX10,LYL1,TRMT1,SYCE2,NFIX,FARSA,GADD45GIP1,DAND5
SE_02_144400191 chr19:13142567-13173643 Sample_02_1444 Adipose SW872_Empty Vector 191 11 802 54 2 110 1279 IER2,STX10,LYL1,TRMT1,NACC1,SYCE2,DHPS,RAD23A,JUNB,NFIX,RNASEH2A,GADD45GIP1,DAND5
SE_02_144700160 chr19:13142811-13174024 Sample_02_1447 Adipose SW872_CAMTA1 160 6 808 55 2 110 1279 IER2,STX10,LYL1,TRMT1,NACC1,SYCE2,DHPS,RAD23A,JUNB,NFIX,RNASEH2A,GADD45GIP1,DAND5
SE_02_144800121 chr19:13143023-13173013 Sample_02_1448 Adipose SW872_YAP5SA 121 7 775 52 2 110 1279 IER2,STX10,LYL1,TRMT1,NACC1,SYCE2,DHPS,RAD23A,JUNB,NFIX,RNASEH2A,GADD45GIP1,DAND5
SE_02_144900548 chr19:13143562-13173893 Sample_02_1449 Adipose SW872_YAP_TFE3 548 7 788 54 2 110 1279 IER2,STX10,LYL1,TRMT1,NACC1,SYCE2,DHPS,RAD23A,JUNB,NFIX,RNASEH2A,GADD45GIP1,DAND5
SE_02_144500274 chr19:13148048-13174983 Sample_02_1445 Adipose SW872_TAZ4SA 274 1 708 50 2 109 937 IER2,STX10,LYL1,TRMT1,NACC1,SYCE2,DHPS,RAD23A,JUNB,NFIX,RNASEH2A,GADD45GIP1,DAND5
SE_02_144600284 chr19:13152001-13173552 Sample_02_1446 Adipose SW872_TAZ_CAMTA1 284 4 574 40 2 94 519 IER2,STX10,LYL1,TRMT1,NACC1,SYCE2,RAD23A,NFIX
Genomic distribution of SEs associated with SYCE2
Genome Browser

The strength of the tissue affected by the gene

Expression of SYCE2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)