SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000170469
Gene: SPATA24 Gene type: protein_coding
Strand: - External links:
Genomic region: chr5:139396563-139404089 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_00_004500197 chr5:139383617-139405029 Sample_00_0045 Thymus thymus 197 2 502 31 1 173 1974 LOC389333,MZB1,SPATA24,DNAJC18,PAIP2,SLC23A1,ZB1,PROB1,SIL1,TE173
SE_00_003901032 chr5:139384226-139405158 Sample_00_0039 Spleen spleen_3y 1032 4 483 27 1 173 1974 LOC389333,MZB1,SPATA24,DNAJC18,PAIP2,SLC23A1,ZB1,PROB1
SE_00_005200978 chr5:139391026-139397469 Sample_00_0052 Heart left ventricle 3y 978 3 148 7 0 122 1145 PROB1,SPATA24,PAIP2,DNAJC18,SLC23A1,MZB1
SE_02_062000063 chr5:139443684-139496648 Sample_02_0620 Aortic Aortic Endothelial Cells_DF 63 14 1128 57 2 57 1399 ECSCR,TMEM173,DNAJC18,SPATA24,PROB1,PAIP2
SE_02_142900123 chr5:139512046-139613657 Sample_02_1429 Blood GM12878_WT 123 26 2654 159 1 0 409 UBE2D2,TMEM173,CXXC5,ECSCR,PAIP2,SPATA24,SLC23A1,MZB1
SE_02_093500009 chr5:139619121-139698931 Sample_02_0935 Retinal Pigmented Epithelial RPE188_Con 9 23 1856 115 5 894 771 CXXC5,UBE2D2,LOC101929696,SPATA24
SE_02_093700056 chr5:139627338-139699607 Sample_02_0937 Retinal Pigmented Epithelial RPE190_Con 56 23 1683 108 5 862 665 CXXC5,UBE2D2,LOC101929696,SPATA24
SE_02_113900094 chr5:139635226-139672111 Sample_02_1139 Retinal Pigmented Epithelial RPE1-anaphase/telophase 94 8 784 36 0 524 202 CXXC5,UBE2D2,SPATA24
SE_02_108500147 chr5:139635352-139672192 Sample_02_1085 Retinal Pigmented Epithelial hTERT-RPE1 147 12 783 35 0 524 202 CXXC5,UBE2D2,SPATA24
SE_02_113800128 chr5:139635385-139672803 Sample_02_1138 Retinal Pigmented Epithelial RPE1-prometaphase 128 8 799 36 0 524 202 CXXC5,UBE2D2,SPATA24
SE_02_093800015 chr5:139635421-139711842 Sample_02_0938 Retinal Pigmented Epithelial RPE190_TnT 15 23 1768 109 7 1046 572 CXXC5,LOC101929696,UBE2D2,SPATA24
SE_02_093600051 chr5:139635872-139711840 Sample_02_0936 Retinal Pigmented Epithelial RPE188_TnT 51 34 1761 109 7 1044 572 CXXC5,LOC101929696,UBE2D2,SPATA24
SE_02_113700416 chr5:139636067-139672019 Sample_02_1137 Retinal Pigmented Epithelial RPE1-interphase 416 8 768 35 0 519 202 CXXC5,UBE2D2,SPATA24
Genomic distribution of SEs associated with SPATA24
Genome Browser

The strength of the tissue affected by the gene

Expression of SPATA24

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)