SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000185669
Gene: SNAI3 Gene type: protein_coding
Strand: - External links:
Genomic region: chr16:88677688-88686507 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_062200535 chr16:88680570-88706337 Sample_02_0622 Blood EOL1_Naive 535 17 1116 101 2 90 1720 SNAI3-AS1,RNF166,SNAI3,IL17C,CTU2,MIR4722,LOC100289580,CYBA,MVD,LOC339059,CDT1
SE_02_152900386 chr16:88688891-88707885 Sample_02_1529 Peripheral blood neutrophils_0BC75 386 1 884 93 4 57 1393 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059,IL17C,TRAPPC2L
SE_02_153000595 chr16:88689324-88709554 Sample_02_1530 Peripheral blood neutrophils_0BA0X 595 1 967 99 3 57 1393 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059,IL17C,TRAPPC2L
SE_02_153100554 chr16:88691927-88706840 Sample_02_1531 Peripheral blood neutrophils_0B9ZK 554 1 721 72 1 55 1320 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059,IL17C,TRAPPC2L
SE_02_092700477 chr16:88697312-88707000 Sample_02_0927 Peripheral blood neutrophils_US 477 1 489 51 0 52 1133 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059,IL17C,TRAPPC2L
SE_01_010900316 chr16:88745970-88785830 Sample_01_0109 Colon transverse colon_54y 316 17 1900 149 10 89 237 PIEZO1,CDT1,CTU2,LOC339059,RNF166,MIR4722,LOC100289580,APRT,SLC22A31,ACSF3,LOC100129697,MVD,CBFA2T3,SNAI3
SE_02_047800466 chr16:88755848-88794034 Sample_02_0478 Colon normal colon mucosa 466 17 1641 129 10 82 133 PIEZO1,CDT1,CTU2,LOC339059,RNF166,MIR4722,LOC100289580,APRT,SLC22A31,ACSF3,LOC100129697,MVD,CBFA2T3,SNAI3
SE_02_116300090 chr16:88768120-88783253 Sample_02_1163 Embryonic kidney HEK293 no dox 90 8 691 55 8 30 0 PIEZO1,LOC339059,CDT1,APRT,LOC100289580,CTU2,RNF166,ZC3H18,MVD,SNAI3
SE_01_011200285 chr16:88768196-88785921 Sample_01_0112 Embryonic kidney HEK293_encode 285 7 764 63 8 60 133 PIEZO1,LOC339059,CDT1,APRT,LOC100289580,CTU2,RNF166,ZC3H18,MVD,SNAI3
SE_02_111400087 chr16:88769557-88786036 Sample_02_1114 Embryonic kidney HEK293 87 9 700 54 7 56 133 PIEZO1,LOC339059,CDT1,APRT,LOC100289580,CTU2,RNF166,ZC3H18,MVD,SNAI3
Genomic distribution of SEs associated with SNAI3
Genome Browser

The strength of the tissue affected by the gene

Expression of SNAI3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)