SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000251322
Gene: SHANK3 Gene type: protein_coding
Strand: + External links:
Genomic region: chr22:50674415-50733298 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_142900491 chr22:50528739-50544928 Sample_02_1429 Blood GM12878_WT 491 4 538 79 6 53 1101 ODF3B,TYMP,KLHDC7B,CHKB-AS1,ADM2,SCO2,MIOX,CPT1B,CHKB,SYCE3,LMF2,NCAPH2,ARSA,RABL2B,SBF1,MAPK8IP2,SHANK3
SE_02_094700114 chr22:50529306-50546401 Sample_02_0947 Tongue Cal27 114 2 564 88 6 53 1007 ODF3B,TYMP,KLHDC7B,CHKB-AS1,ADM2,SCO2,MIOX,CPT1B,CHKB,SYCE3,LMF2,NCAPH2,DENND6B,ARSA,SBF1,MAPK8IP2,SHANK3
SE_02_094600829 chr22:50529428-50544825 Sample_02_0946 Tongue HN12 829 4 518 77 6 48 965 ODF3B,TYMP,KLHDC7B,CHKB-AS1,ADM2,SCO2,MIOX,CPT1B,CHKB,SYCE3,LMF2,NCAPH2,DENND6B,ARSA,SBF1,MAPK8IP2,SHANK3
SE_02_047000025 chr22:50539152-50541817 Sample_02_0470 Blood GM12878 25 2 65 14 2 0 0 KLHDC7B,CHKB-AS1,SYCE3,ODF3B,SCO2,CPT1B,CHKB,LMF2,NCAPH2,TYMP,ARSA,RABL2B,ADM2,SBF1,MAPK8IP2,MIOX,SHANK3
SE_02_089000391 chr22:50640425-50715597 Sample_02_0890 Heart left ventricle_LV1200 391 19 2267 158 5 271 2022 SHANK3,MAPK8IP2,RPL23AP82,ACR,ARSA,CPT1B,SYCE3
SE_02_151900137 chr22:50640500-50700382 Sample_02_1519 Umbilical vein HUVEC_Scr_IL1beta 137 16 1712 127 4 215 1307 SHANK3,MAPK8IP2,ARSA,ACR,RABL2B,CHKB
SE_02_088800505 chr22:50640684-50731952 Sample_02_0888 Heart left ventricle_LV1160 505 23 2700 184 5 487 3234 SHANK3,MAPK8IP2,RPL23AP82,ACR,ARSA,CPT1B,SYCE3
SE_02_089600440 chr22:50640805-50715624 Sample_02_0896 Heart left ventricle_LV1294 440 19 2251 154 5 271 2031 SHANK3,MAPK8IP2,RPL23AP82,ACR,ARSA,CPT1B,SYCE3
SE_02_046500857 chr22:50641000-50698153 Sample_02_0465 Adipose subcutaneous adipocytes 857 17 1601 118 4 194 1203 SHANK3,MAPK8IP2,ARSA,ACR,CPT1B,CHKB
SE_02_095000386 chr22:50641156-50699022 Sample_02_0950 Umbilical vein HUVEC_WT 386 11 1629 119 4 209 1307 SHANK3,MAPK8IP2,ARSA,ACR,RABL2B,CHKB
SE_02_089900242 chr22:50655230-50715612 Sample_02_0899 Heart left ventricle_LV1400 242 17 1862 120 5 261 2025 SHANK3,RPL23AP82,ACR,ARSA,CPT1B,SYCE3
SE_02_151800075 chr22:50655269-50700866 Sample_02_1518 Umbilical vein HUVEC_Scr 75 14 1321 90 4 205 1307 SHANK3,ARSA,ACR,RABL2B,CHKB
SE_00_004000237 chr22:50655475-50734643 Sample_00_0040 Spleen spleen_30y 237 22 2376 150 6 510 3551 SHANK3,ARSA,RABL2B,RPL23AP82,ACR,CHKB,APK8IP2,ODF3B
SE_00_005500323 chr22:50670564-50733983 Sample_00_0055 Spleen spleen 34y 323 41 1934 115 4 488 3551 SHANK3,RPL23AP82,RABL2B,ARSA,ACR,MAPK8IP2,CHKB,ODF3B,TYMP,NCAPH2
SE_02_146900422 chr22:50670593-50705923 Sample_02_1469 Umbilical Vein HUVEC 422 6 1072 62 3 217 1666 SHANK3,ARSA,ACR,RABL2B,CHKB
SE_00_004600493 chr22:50670699-50722464 Sample_00_0046 Heart right ventricle_34y 493 21 1629 97 3 353 2814 SHANK3,RPL23AP82,ACR,ARSA,MAPK8IP2,CHKB,SYCE3
Genomic distribution of SEs associated with SHANK3
Genome Browser

The strength of the tissue affected by the gene

Expression of SHANK3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)