SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000143751
Gene: SDE2 Gene type: protein_coding
Strand: - External links:
Genomic region: chr1:225982702-225999343 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_122900643 chr1:225915737-225937470 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 643 19 583 46 1 62 928 PYCR2,LEFTY2,MIR6741,TMEM63A,LEFTY1,SDE2
SE_02_113000563 chr1:225924425-225945086 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 563 4 513 38 0 59 739 LEFTY2,TMEM63A,LEFTY1,MIR6741,PYCR2,SDE2,RP4-559A3.7
SE_02_122900392 chr1:225968838-226007267 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 392 17 1026 57 0 60 636 SDE2,PYCR2,MIR6741,LEFTY2,H3F3A,TMEM63A,RP4-559A3.7
SE_02_103300421 chr1:225987936-226009637 Sample_02_1033 Haematopoietic and lymphoid tissue bone marrow K562 421 7 546 41 0 52 345 SDE2,LEFTY2,H3F3A
SE_04_000100288 chr1:225994059-226010100 Sample_04_0001 Blood heat shocked K562 288 2 387 31 0 47 155 SDE2,H3F3A
SE_04_000200245 chr1:225994089-226010173 Sample_04_0002 Blood cold shocked K562 245 2 387 31 0 47 155 SDE2,H3F3A
SE_02_109900410 chr1:225995936-226009619 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 410 11 334 26 0 47 124 SDE2,H3F3A
SE_02_054500232 chr1:225996039-226010669 Sample_02_0545 Bone marrow K562 WT 232 6 358 29 0 47 124 SDE2,H3F3A
SE_02_084100462 chr1:225997814-226041080 Sample_02_0841 Blood THP-1_untr 462 12 1038 96 1 81 124 SDE2,H3F3A,H3F3AP4,EPHX1,PYCR2,ACBD3
SE_02_092800183 chr1:226025309-226037229 Sample_02_0928 Peripheral blood neutrophils_Ecoli 183 1 272 28 0 23 0 H3F3A,SDE2,H3F3AP4,PYCR2,LEFTY2,TMEM63A,ACBD3
SE_02_092700238 chr1:226026342-226037367 Sample_02_0927 Peripheral blood neutrophils_US 238 1 225 22 0 23 0 H3F3A,SDE2,H3F3AP4,PYCR2,LEFTY2,TMEM63A,ACBD3
SE_02_153000374 chr1:226026888-226039047 Sample_02_1530 Peripheral blood neutrophils_0BA0X 374 1 253 23 0 22 0 H3F3A,SDE2,H3F3AP4,PYCR2,LEFTY2,TMEM63A,ACBD3
SE_02_153100111 chr1:226027283-226065516 Sample_02_1531 Peripheral blood neutrophils_0B9ZK 111 12 895 80 2 110 208 H3F3AP4,H3F3A,SDE2,PYCR2,LEFTY2,TMEM63A,ACBD3
SE_02_152900360 chr1:226027959-226037440 Sample_02_1529 Peripheral blood neutrophils_0BC75 360 1 188 20 0 7 0 H3F3A,SDE2,H3F3AP4,PYCR2,LEFTY2,TMEM63A,ACBD3
SE_02_122901115 chr1:226060151-226083827 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 1115 14 634 30 2 133 416 H3F3AP4,H3F3A,SDE2
SE_00_004600920 chr1:226108653-226122644 Sample_00_0046 Heart right ventricle_34y 920 2 328 26 0 18 0 H3F3A,H3F3AP4,PYCR2,LEFTY1,SDE2
SE_01_011200291 chr1:226109352-226122989 Sample_01_0112 Embryonic kidney HEK293_encode 291 3 316 24 0 18 0 H3F3A,H3F3AP4,PYCR2,ACBD3,SDE2
SE_02_047700309 chr1:226109526-226136126 Sample_02_0477 Colon intestinal epithelial organoids_139a 309 9 674 52 2 19 0 H3F3A,H3F3AP4,PYCR2,TMEM63A,SDE2
SE_02_087500064 chr1:226626298-226740672 Sample_02_0875 Peripheral blood Peripheral blood-derived mast cells 64 42 3150 155 11 429 2018 ITPKB,ITPKB-IT1,PSEN2,ADCK3,ACBD3,SDE2
Genomic distribution of SEs associated with SDE2
Genome Browser

The strength of the tissue affected by the gene

Expression of SDE2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)