SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000168356
Gene: SCN11A Gene type: protein_coding
Strand: - External links:
Genomic region: chr3:38845764-39052157 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_072700598 chr3:38984288-38998634 Sample_02_0727 Fetal lung IMR90_Etoposide 598 4 371 40 0 7 0 SCN11A,WDR48
SE_02_049100722 chr3:39140136-39181465 Sample_02_0491 Pharyng Detroit 562-Control 722 8 1029 99 4 195 1091 CSRNP1,GORASP1,XIRP1,TTC21A,MIR6822,SCN11A,WDR48
SE_02_049200790 chr3:39140232-39181555 Sample_02_0492 Pharyng Detroit 562_LPS 790 11 1029 98 4 196 1091 CSRNP1,GORASP1,XIRP1,TTC21A,MIR6822,SCN11A,WDR48
SE_02_093800114 chr3:39140250-39180754 Sample_02_0938 Retinal Pigmented Epithelial RPE190_TnT 114 8 1008 97 4 181 1091 CSRNP1,GORASP1,XIRP1,TTC21A,MIR6822,SCN11A
SE_02_093600139 chr3:39141032-39180810 Sample_02_0936 Retinal Pigmented Epithelial RPE188_TnT 139 7 988 94 4 181 1091 CSRNP1,GORASP1,XIRP1,TTC21A,MIR6822,SCN11A
SE_02_113701144 chr3:39141471-39180748 Sample_02_1137 Retinal Pigmented Epithelial RPE1-interphase 1144 7 975 94 4 177 1091 CSRNP1,GORASP1,XIRP1,TTC21A,MIR6822,SCN11A
SE_02_113800604 chr3:39145904-39178831 Sample_02_1138 Retinal Pigmented Epithelial RPE1-prometaphase 604 3 792 82 4 135 391 CSRNP1,GORASP1,XIRP1,TTC21A,MIR6822,SCN11A
SE_01_011500466 chr3:39145909-39153619 Sample_01_0115 Skeletal Muscle myotube originated from skeletal muscle myoblast 466 2 184 15 1 84 234 CSRNP1,GORASP1,XIRP1,TTC21A,MIR6822,SCN11A
SE_02_113900426 chr3:39145954-39180937 Sample_02_1139 Retinal Pigmented Epithelial RPE1-anaphase/telophase 426 4 842 83 4 140 391 CSRNP1,GORASP1,XIRP1,TTC21A,MIR6822,SCN11A
SE_02_132200444 chr3:39146172-39178802 Sample_02_1322 Connective Tissue HT1080_WT 444 5 789 81 4 135 391 CSRNP1,GORASP1,XIRP1,TTC21A,MIR6822,SCN11A,WDR48
SE_02_108500777 chr3:39146312-39178471 Sample_02_1085 Retinal Pigmented Epithelial hTERT-RPE1 777 5 778 81 4 135 384 CSRNP1,GORASP1,XIRP1,TTC21A,MIR6822,SCN11A
SE_02_132000343 chr3:39146435-39180799 Sample_02_1320 Connective Tissue HT1080_EWS-FLI1 343 7 830 81 4 135 361 CSRNP1,GORASP1,XIRP1,TTC21A,MIR6822,SCN11A,WDR48
SE_02_132100688 chr3:39146470-39180800 Sample_02_1321 Connective Tissue HT1080_FUS-DDIT3 688 8 829 81 4 135 351 CSRNP1,GORASP1,XIRP1,TTC21A,MIR6822,SCN11A,WDR48
SE_02_093500424 chr3:39147210-39153956 Sample_02_0935 Retinal Pigmented Epithelial RPE188_Con 424 5 168 13 1 102 163 CSRNP1,GORASP1,XIRP1,TTC21A,MIR6822,SCN11A
Genomic distribution of SEs associated with SCN11A
Genome Browser

The strength of the tissue affected by the gene

Expression of SCN11A

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)