SEdb 2.0
  1. Search
  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000117000
Gene: RLF Gene type: protein_coding
Strand: + External links:
Genomic region: chr1:40161387-40240921 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_103300794 chr1:39880550-39902474 Sample_02_1033 Haematopoietic and lymphoid tissue bone marrow K562 794 4 505 51 2 244 1140 MYCL,TRIT1,BMP8B,RLF,CAP1
SE_04_000200138 chr1:40372630-40405449 Sample_04_0002 Blood cold shocked K562 138 3 824 60 0 132 386 SMAP2,ZFP69B,ZMPSTE24,RLF,EXO5,ZFP69
SE_04_000100403 chr1:40372718-40404881 Sample_04_0001 Blood heat shocked K562 403 3 812 59 0 131 386 SMAP2,ZFP69B,ZMPSTE24,RLF,EXO5,ZFP69
SE_02_111600157 chr1:40372935-40404522 Sample_02_1116 Haematopoietic and lymphoid tissue bone marrow K562_native 157 5 801 59 0 131 386 SMAP2,ZFP69B,ZMPSTE24,RLF,EXO5,ZFP69
SE_02_103300030 chr1:40372990-40406852 Sample_02_1033 Haematopoietic and lymphoid tissue bone marrow K562 30 5 843 63 0 144 416 SMAP2,ZFP69B,ZMPSTE24,RLF,EXO5,ZFP69
SE_02_054500202 chr1:40373648-40401278 Sample_02_0545 Bone marrow K562 WT 202 5 704 53 0 122 336 SMAP2,ZFP69B,ZMPSTE24,RLF,EXO5,ZFP69
SE_02_113000157 chr1:40373662-40404842 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 157 8 789 56 0 129 334 SMAP2,ZFP69B,ZMPSTE24,RLF,EXO5,ZFP69
SE_02_046500361 chr1:40373681-40404625 Sample_02_0465 Adipose subcutaneous adipocytes 361 19 784 56 0 127 326 SMAP2,ZFP69B,RLF,ZFP69
SE_02_122900146 chr1:40373731-40425463 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 146 14 1275 89 2 220 1074 SMAP2,ZFP69B,ZMPSTE24,RLF,EXO5,ZFP69
SE_02_098700224 chr1:40374643-40400367 Sample_02_0987 Blood K562_Control_1 224 9 661 49 0 96 111 SMAP2,ZMPSTE24,RLF,EXO5,ZFP69B,ZFP69
SE_02_142200081 chr1:40376577-40386567 Sample_02_1422 Haematopoietic and lymphoid tissue bone marrow K562_Triptolide_0h 81 5 248 15 0 45 0 SMAP2,ZMPSTE24,RLF,EXO5,ZFP69B,ZFP69
SE_02_098800760 chr1:40377001-40387104 Sample_02_0988 Blood K562_EPZ 760 3 246 14 0 42 0 SMAP2,ZMPSTE24,RLF,EXO5,ZFP69B,ZFP69
SE_02_109900544 chr1:40377023-40400503 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 544 15 601 43 0 87 89 SMAP2,ZMPSTE24,RLF,EXO5,ZFP69B,ZFP69
SE_02_142400213 chr1:40377075-40386693 Sample_02_1424 Haematopoietic and lymphoid tissue bone marrow K562_Triptolide_4h 213 10 237 13 0 42 0 SMAP2,ZMPSTE24,RLF,EXO5,ZFP69B,ZFP69
SE_02_142300128 chr1:40377103-40386597 Sample_02_1423 Haematopoietic and lymphoid tissue bone marrow K562_Triptolide_1h 128 5 231 13 0 41 0 SMAP2,ZMPSTE24,RLF,EXO5,ZFP69B,ZFP69
SE_02_112900367 chr1:40379827-40404555 Sample_02_1129 Adipose visceral adipose_CTL_HCTR13 367 18 643 44 0 94 89 SMAP2,ZFP69B,RLF,ZFP69
SE_01_009900408 chr1:40380208-40404048 Sample_01_0099 Colon transverse colon 408 8 630 44 0 90 89 SMAP2,ZFP69B,RLF,ZFP69
SE_02_054700200 chr1:40380525-40386699 Sample_02_0547 Bone marrow K562_MYO1D_Hub_KO 200 3 169 6 0 37 0 SMAP2,ZMPSTE24,RLF,EXO5,ZFP69B,ZFP69
SE_01_010400393 chr1:40380616-40399900 Sample_01_0104 Lung upper lobe of left lung 393 3 515 32 0 82 89 SMAP2,COL9A2,RLF,ZFP69B,ZFP69
SE_02_112800452 chr1:40381421-40400708 Sample_02_1128 Adipose visceral adipose_CTL_HCTR10 452 15 509 35 0 78 89 SMAP2,ZFP69B,RLF,ZFP69
Genomic distribution of SEs associated with RLF
Genome Browser

The strength of the tissue affected by the gene

Expression of RLF

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)