SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000115255
Gene: REEP6 Gene type: protein_coding
Strand: + External links:
Genomic region: chr19:1491166-1497927 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_058400109 chr19:1161091-1219406 Sample_02_0584 Lung H1299 WT 109 23 1939 103 3 82 854 STK11,SBNO2,CIRBP,ATP5D,CBARP,MIDN,GAMT,GPX4,HMHA1,EFNA2,POLR2E,MED16,C19orf24,ABCA7,WDR18,NDUFS7,REEP6,C19orf26
SE_00_004900008 chr19:1243471-1267088 Sample_00_0049 Small intestine small intestine 30y 8 12 900 22 1 257 1997 ATP5D,MIDN,C19ORF24,CIRBP,CIRBP-AS1,STK11,CBARP,EFNA2,GPX4,POLR2E,HMHA1,SBNO2,C19orf24,MUM1,REEP6,C19orf26,ADAMTSL5
SE_02_100000163 chr19:1244798-1267136 Sample_02_1000 Brain Lateral temporal lobe_15T_Young 163 10 856 22 1 254 1755 ATP5D,MIDN,C19ORF24,CIRBP,CIRBP-AS1,STK11,CBARP,EFNA2,GAMT,GPX4,SBNO2,C19orf24,TMEM259,REEP6,C19orf26
SE_02_120500431 chr19:1247423-1258701 Sample_02_1205 Brain NB3 431 1 458 8 1 176 1562 MIDN,C19ORF24,CIRBP,CIRBP-AS1,ATP5D,STK11,CBARP,EFNA2,GPX4,SBNO2,C19orf24,REXO1,REEP6,C19orf25,C19orf26
SE_02_100600069 chr19:1250060-1267030 Sample_02_1006 Brain Lateral temporal lobe_13T_Old 69 8 631 16 1 181 1442 MIDN,C19ORF24,CIRBP,CIRBP-AS1,ATP5D,STK11,CBARP,EFNA2,GAMT,GPX4,SBNO2,C19orf24,TMEM259,REEP6,C19orf26
SE_02_100700060 chr19:1250417-1273383 Sample_02_1007 Brain Lateral temporal lobe_14T_Old 60 11 849 25 0 244 2460 CIRBP-AS1,CIRBP,MIDN,C19ORF24,ATP5D,STK11,CBARP,EFNA2,GAMT,GPX4,SBNO2,C19orf24,TMEM259,REEP6,C19orf26
SE_02_120400465 chr19:1250744-1257983 Sample_02_1204 Brain NB2 465 1 329 3 0 87 915 MIDN,C19ORF24,CIRBP,CIRBP-AS1,ATP5D,STK11,CBARP,EFNA2,GPX4,SBNO2,C19orf24,REXO1,REEP6,C19orf25,C19orf26
SE_02_098900348 chr19:1250750-1267491 Sample_02_0989 Kidney kidney cortex_WT 348 1 633 15 0 164 1272 CIRBP-AS1,MIDN,C19ORF24,CIRBP,ATP5D,STK11,CBARP,EFNA2,SBNO2,TCF3,MBD3,POLR2E,APC2,UQCR11,NDUFS7,MUM1,REEP6,C19orf26
SE_02_127700312 chr19:1250859-1273048 Sample_02_1277 Prostate PC3_COMBO 312 7 834 25 0 227 2313 CIRBP-AS1,CIRBP,MIDN,C19ORF24,ATP5D,STK11,CBARP,EFNA2,RPS15,SBNO2,WDR18,NDUFS7,TMEM259,REEP6,C19orf26
SE_02_100400121 chr19:1253740-1266968 Sample_02_1004 Brain Lateral temporal lobe_10T_Old 121 4 470 12 0 121 1035 MIDN,C19ORF24,CIRBP,CIRBP-AS1,ATP5D,STK11,CBARP,EFNA2,GAMT,GPX4,SBNO2,C19orf24,TMEM259,REEP6,C19orf26
SE_02_120400650 chr19:1444791-1456783 Sample_02_1204 Brain NB2 650 5 401 28 0 50 1278 APC2,DAZAP1,GAMT,RPS15,PCSK4,REEP6,C19ORF25,PLK5,C19orf25,MEX3D,ADAMTSL5
SE_02_120500523 chr19:1444846-1475186 Sample_02_1205 Brain NB3 523 10 1046 64 0 195 4687 APC2,C19ORF25,DAZAP1,GAMT,ADAMTSL5,RPS15,PLK5,PCSK4,REEP6,C19orf25,MEX3D
SE_02_142400013 chr19:1825894-1883188 Sample_02_1424 Haematopoietic and lymphoid tissue bone marrow K562_Triptolide_4h 13 14 1947 137 2 168 2796 REXO1,KLF16,ABHD17A,ATP8B3,LOC100288123,ADAT3,MIR1909,SCAMP4,TCF3,IZUMO4,MKNK2,SF3A2,OAZ1,REEP6,PCSK4,BTBD2,CSNK1G2,MIDN,JSRP1,MOB3A,DOT1L
SE_04_000100405 chr19:1851612-1866214 Sample_04_0001 Blood heat shocked K562 405 1 422 42 1 59 1048 KLF16,ATP8B3,REXO1,LOC100288123,ADAT3,MIR1909,SCAMP4,ABHD17A,TCF3,IZUMO4,MKNK2,OAZ1,REEP6,PCSK4,BTBD2,CSNK1G2,JSRP1,MOB3A,DOT1L
SE_02_098700076 chr19:1852584-1898689 Sample_02_0987 Blood K562_Control_1 76 16 1423 106 2 122 1913 KLF16,ABHD17A,ATP8B3,REXO1,LOC100288123,CSNK1G2,ADAT3,MIR1909,SCAMP4,TCF3,IZUMO4,MKNK2,SF3A2,OAZ1,REEP6,PCSK4,BTBD2,MIDN,JSRP1,MOB3A,DOT1L
SE_02_142200080 chr19:1853578-1876576 Sample_02_1422 Haematopoietic and lymphoid tissue bone marrow K562_Triptolide_0h 80 7 710 54 2 46 677 KLF16,ATP8B3,REXO1,LOC100288123,ADAT3,MIR1909,SCAMP4,ABHD17A,TCF3,IZUMO4,MKNK2,OAZ1,REEP6,PCSK4,BTBD2,CSNK1G2,JSRP1,MOB3A,DOT1L
Genomic distribution of SEs associated with REEP6
Genome Browser

The strength of the tissue affected by the gene

Expression of REEP6

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)