SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000141542
Gene: RAB40B Gene type: protein_coding
Strand: - External links:
Genomic region: chr17:82654973-82698698 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_120500129 chr17:82650175-82713139 Sample_02_1205 Brain NB3 129 26 2236 327 1 73 900 MIR4525,RAB40B,FN3KRP,FN3K,WDR45B,TBCD
SE_02_120400201 chr17:82663467-82713026 Sample_02_1204 Brain NB2 201 14 1746 275 0 35 468 MIR4525,RAB40B,FN3KRP,FN3K,WDR45B,TBCD
SE_02_094700466 chr17:82835344-82890341 Sample_02_0947 Tongue Cal27 466 7 2049 294 3 0 271 ZNF750,TBCD,RAB40B,FN3K,FN3KRP
SE_01_010500184 chr17:82836712-82894171 Sample_01_0105 Thyroid gland thyroid gland_54y 184 10 2126 305 3 0 317 ZNF750,TBCD,METRNL,B3GNTL1,RAB40B
SE_02_095000473 chr17:82842375-82895390 Sample_02_0950 Umbilical vein HUVEC_WT 473 28 1971 293 2 0 243 TBCD,ZNF750,RAB40B,FN3K
SE_02_083100160 chr17:82842380-82894516 Sample_02_0831 Umblical vein HUVECs_TNF0min 160 22 1953 289 2 0 243 TBCD,ZNF750,RAB40B,FN3K
SE_02_083200321 chr17:82843289-82886409 Sample_02_0832 Umblical vein HUVECs_TNF30min 321 15 1631 253 2 0 151 TBCD,ZNF750,RAB40B,FN3K
SE_02_058500261 chr17:82844084-82894539 Sample_02_0585 Umbilical vein HUVEC 0hour 261 21 1895 276 2 0 243 TBCD,ZNF750,RAB40B,FN3K
SE_02_151800172 chr17:82844220-82893127 Sample_02_1518 Umbilical vein HUVEC_Scr 172 12 1853 271 2 0 197 TBCD,ZNF750,RAB40B,FN3K
SE_02_146900326 chr17:82844278-82893482 Sample_02_1469 Umbilical Vein HUVEC 326 13 1872 273 2 0 214 TBCD,ZNF750,RAB40B,FN3K
SE_02_151900455 chr17:82844283-82886441 Sample_02_1519 Umbilical vein HUVEC_Scr_IL1beta 455 13 1597 246 2 0 151 TBCD,ZNF750,RAB40B,FN3K
SE_02_152000459 chr17:82844290-82886350 Sample_02_1520 Umbilical vein HUVEC_Notch1kd_IL1beta 459 12 1592 244 2 0 151 TBCD,ZNF750,RAB40B,FN3K
SE_01_011501351 chr17:82859027-82877082 Sample_01_0115 Skeletal Muscle myotube originated from skeletal muscle myoblast 1351 4 715 85 1 0 89 TBCD,ZNF750,METRNL,RAB40B
SE_02_153300369 chr17:82874919-82894062 Sample_02_1533 Lung purified primary alveolar epithelial type 2 cells 369 7 683 96 1 0 154 TBCD,ZNF750,C17orf62,RAB40B,WDR45B,FN3KRP
SE_02_151300916 chr17:82874927-82893363 Sample_02_1513 Lung Transitional AT2->1 cells 916 9 667 94 1 0 108 TBCD,ZNF750,C17orf62,RAB40B,WDR45B,FN3KRP
SE_02_151200370 chr17:82874944-82894085 Sample_02_1512 Lung Purified AT2 cells 370 7 683 97 1 0 154 TBCD,ZNF750,C17orf62,RAB40B,WDR45B,FN3KRP
Genomic distribution of SEs associated with RAB40B
Genome Browser

The strength of the tissue affected by the gene

Expression of RAB40B

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)