SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000160013
Gene: PTGIR Gene type: protein_coding
Strand: - External links:
Genomic region: chr19:46620468-46625089 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_00_000400400 chr19:46639680-46660903 Sample_00_0004 Aorta aorta 400 5 567 47 1 118 1331 DACT3,PTGIR,CALM3,MIR320E,GNG8
SE_00_005500426 chr19:46715359-46739613 Sample_00_0055 Spleen spleen 34y 426 15 811 62 3 170 2384 PRKD2,STRN4,MIR320E,SLC1A5,FKRP,PTGIR,AP2S1,CALM3,DACT3
SE_02_087900048 chr19:46840928-46982500 Sample_02_0879 Ovary SVOG3e cells_Dox_12h_control 48 30 3614 132 1 366 788 AP2S1,ARHGAP35,SNAR-E,NPAS1,PTGIR,STRN4,FKRP,PRKD2,DACT3,SLC1A5,MEIS3
SE_02_087800047 chr19:46843657-46983028 Sample_02_0878 Ovary SVOG3e cells_noDox_control 47 30 3521 127 1 372 788 AP2S1,ARHGAP35,SNAR-E,NPAS1,PTGIR,STRN4,FKRP,PRKD2,DACT3,SLC1A5,MEIS3
SE_02_088200033 chr19:46843817-46984346 Sample_02_0882 Ovary SVOG3e_cells_noDox_transduced with V5-FOXL2 C134W 33 37 3537 127 1 375 788 AP2S1,ARHGAP35,SNAR-E,NPAS1,PTGIR,STRN4,FKRP,PRKD2,DACT3,SLC1A5,MEIS3
SE_02_088300040 chr19:46843826-46985515 Sample_02_0883 Ovary SVOG3e_cells_Dox_12h_transduced with V5-FOXL2 C134W 40 31 3574 129 1 381 788 AP2S1,ARHGAP35,SNAR-E,NPAS1,PTGIR,STRN4,FKRP,PRKD2,DACT3,SLC1A5,MEIS3
SE_02_088100057 chr19:46856301-46991206 Sample_02_0881 Ovary SVOG3e cells_Dox_12h_transduced_V5-FOXL2_WT 57 28 3359 126 1 361 699 ARHGAP35,SNAR-E,AP2S1,NPAS1,PTGIR,STRN4,FKRP,PRKD2,DACT3,SLC1A5,MEIS3
SE_02_088000067 chr19:46856357-46982984 Sample_02_0880 Ovary SVOG3e cells_noDox_transduced_V5-FOXL2_WT 67 28 3167 115 1 345 540 ARHGAP35,SNAR-E,AP2S1,NPAS1,PTGIR,STRN4,FKRP,PRKD2,DACT3,SLC1A5,MEIS3
Genomic distribution of SEs associated with PTGIR
Genome Browser

The strength of the tissue affected by the gene

Expression of PTGIR

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)