SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000285437
Gene: POLR2J3 Gene type: protein_coding
Strand: - External links:
Genomic region: chr7:102562133-102572583 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_122901396 chr7:102502463-102514475 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 1396 12 37 1 0 28 753 RASA4B,POLR2J,ALKBH4,MIR4467,MIR5090,LRWD1,SPDYE2B,PRKRIP1,POLR2J3
SE_02_072701060 chr7:102503895-102521601 Sample_02_0727 Fetal lung IMR90_Etoposide 1060 7 61 2 1 55 840 RASA4B,POLR2J,ALKBH4,MIR4467,MIR5090,LRWD1,SPDYE2B,POLR2J3
SE_02_158300667 chr7:102504783-102547384 Sample_02_1583 Fetal lung IMR90_empty_GM 667 16 149 14 1 76 1803 POLR2J3,RASA4B,POLR2J,ALKBH4,MIR4467,MIR5090,LRWD1,SPDYE2B
SE_00_004000605 chr7:102510763-102518183 Sample_00_0040 Spleen spleen_30y 605 1 15 0 0 33 475 LRWD1,SPDYE2L,ALKBH4,POLR2J,ORAI2,POLR2J3,PRKRIP1,RP11-514P8.6,SPDYE2
SE_02_098800892 chr7:102582824-102612510 Sample_02_0988 Blood K562_EPZ 892 8 93 9 0 100 2711 RASA4B,RASA4,POLR2J3,SPDYE2B,UPK3BL,ALKBH4,FAM185A,POLR2J2
SE_02_122901418 chr7:102601382-102613539 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 1418 7 42 1 0 33 875 RASA4B,RASA4,POLR2J3,UPK3BL,ALKBH4,FAM185A,POLR2J2
SE_02_156600350 chr7:102601874-102620600 Sample_02_1566 Dermal Dermal fibroblast 350 5 79 1 0 56 1087 RASA4B,RASA4,POLR2J3,UPK3BL,SPDYE2B,RP11-514P8.6,SPDYE2
SE_02_072700924 chr7:102603448-102620581 Sample_02_0727 Fetal lung IMR90_Etoposide 924 7 78 1 0 55 962 RASA4B,RASA4,POLR2J3,UPK3BL
SE_02_158300394 chr7:102603740-102670099 Sample_02_1583 Fetal lung IMR90_empty_GM 394 23 245 17 0 55 3307 RASA4B,RASA4,SPDYE2B,POLR2J2,UPK3BL,POLR2J3
SE_02_147200941 chr7:102603818-102611505 Sample_02_1472 Fetal lung IMR-90 941 2 34 0 0 28 658 RASA4B,RASA4,POLR2J3,UPK3BL
SE_00_004000606 chr7:102609925-102617162 Sample_00_0040 Spleen spleen_30y 606 1 20 0 0 30 475 RASA4,POLR2J3,UPK3BL,RP11-514P8.6,SPDYE2,SPDYE2B
Genomic distribution of SEs associated with POLR2J3
Genome Browser

The strength of the tissue affected by the gene

Expression of POLR2J3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)