Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000127838
Gene: PNKD Gene type: protein_coding
Strand: + External links:
Genomic region: chr2:218270392-218346793 Genome Browser:

Super-enhancer search result of gene-based

SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_158300774 chr2:218219789-218258914 Sample_02_1583 Fetal lung IMR90_empty_GM 774 17 1061 103 7 121 767 ARPC2,AAMP,GPBAR1,PNKD,MIR6513,TMBIM1
SE_02_087500592 chr2:218281581-218293572 Sample_02_0875 Peripheral blood Peripheral blood-derived mast cells 592 1 309 42 1 43 546 PNKD,TMBIM1,AAMP,MIR6810,GPBAR1,MIR6513
SE_02_121800312 chr2:218320922-218337177 Sample_02_1218 Bone marrow Daudi 312 5 407 46 1 39 200 PNKD,CATIP-AS2,MIR6810,CATIP,SLC11A1,MIR6513,TMBIM1,CATIP-AS1,CTDSP1,BCS1L,USP37
SE_02_122500427 chr2:218325251-218335968 Sample_02_1225 Bone marrow RAJI 427 1 289 22 1 19 0 PNKD,CATIP-AS2,MIR6810,CATIP,SLC11A1,MIR6513,TMBIM1,CATIP-AS1,AAMP,CTDSP1
SE_00_005500596 chr2:218366994-218372310 Sample_00_0055 Spleen spleen 34y 596 1 159 16 1 10 304 CATIP,CATIP-AS1,CTDSP1,PNKD,MIR26B,MIR6810,VIL1,SLC11A1,CATIP-AS2,CXCR1,GPBAR1,AAMP,ZNF142,ARPC2,USP37,TMBIM1
SE_01_011200489 chr2:218387684-218407284 Sample_01_0112 Embryonic kidney HEK293_encode 489 4 671 34 1 160 2743 SLC11A1,CTDSP1,MIR26B,CATIP-AS2,MIR6810,CATIP,VIL1,CATIP-AS1,USP37,TMBIM1,PNKD
SE_02_121800682 chr2:218393821-218407154 Sample_02_1218 Bone marrow Daudi 682 6 494 27 1 136 2140 SLC11A1,CTDSP1,MIR26B,CATIP-AS2,CATIP,VIL1,CATIP-AS1,AAMP,BCS1L,PNKD
SE_02_066600271 chr2:218395903-218406981 Sample_02_0666 Prostate RWPE1 Lacz rep1 271 3 419 24 0 123 1747 SLC11A1,CTDSP1,MIR26B,CATIP-AS2,CATIP,VIL1,CATIP-AS1,AAMP,USP37,PNKD,PLCD4

Genomic distribution of SEs associated with PNKD

The strength of the tissue affected by the gene


Expression of PNKD