SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000100311
Gene: PDGFB Gene type: protein_coding
Strand: - External links:
Genomic region: chr22:39223359-39244982 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_00_004000522 chr22:39130945-39153714 Sample_00_0040 Spleen spleen_30y 522 5 639 72 10 108 1344 CBX7,APOBEC3H,AL031590.1,PDGFB
SE_00_003901072 chr22:39143815-39153805 Sample_00_0039 Spleen spleen_3y 1072 2 264 29 3 63 226 CBX7,APOBEC3H,AL031590.1,PDGFB
SE_01_010400949 chr22:39143967-39153671 Sample_01_0104 Lung upper lobe of left lung 949 2 257 29 3 62 226 CBX7,APOBEC3H,SUN2,PDGFB,APOBEC3C,APOBEC3G,APOBEC3F,APOBEC3D
SE_00_002200545 chr22:39170917-39186168 Sample_00_0022 Lung lung_30y 545 4 497 43 0 77 0 CBX7,AL031590.1,APOBEC3F,PDGFB
SE_00_003100874 chr22:39170935-39186372 Sample_00_0031 Placenta placenta 874 4 503 42 0 77 0 CBX7,AL031590.1,PDGFB
SE_02_116000040 chr22:39171465-39235450 Sample_02_1160 Embryo H1_shLuc 40 15 2066 203 10 210 870 PDGFB,CBX7,AL031590.1
SE_02_062000712 chr22:39173333-39179103 Sample_02_0620 Aortic Aortic Endothelial Cells_DF 712 5 192 19 0 65 0 CBX7,RPL3,PDGFB,TAB1
SE_02_062100114 chr22:39175002-39179026 Sample_02_0621 Aortic Aortic Endothelial Cells_UF 114 5 135 10 0 28 0 CBX7,RPL3,PDGFB,TAB1
SE_01_010400242 chr22:39230028-39310938 Sample_01_0104 Lung upper lobe of left lung 242 26 2619 219 14 433 970 PDGFB,RNU86,RPL3,SNORD83B,SNORD43,SNORD83A,SYNGR1,MGAT3,CBX7
SE_00_004600314 chr22:39230197-39255450 Sample_00_0046 Heart right ventricle_34y 314 8 773 44 4 303 932 PDGFB,RPL3,SYNGR1,CBX7
SE_00_005700190 chr22:39230707-39309368 Sample_00_0057 Heart right ventricle 3y 190 26 2529 216 13 413 893 PDGFB,RNU86,RPL3,SNORD83B,SNORD43,SNORD83A,SYNGR1,CBX7
SE_02_093000077 chr22:39232906-39310862 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 77 31 2519 214 13 406 767 PDGFB,RNU86,RPL3,SNORD83B,SNORD43,SNORD83A,SYNGR1,AL031590.1
SE_01_010101225 chr22:39233900-39260699 Sample_01_0101 Pancreas pancreas_54y 1225 7 824 46 3 280 651 PDGFB,CACNA1I
SE_02_054501129 chr22:39252399-39309406 Sample_02_0545 Bone marrow K562 WT 1129 17 1880 176 10 121 0 RNU86,RPL3,SNORD83B,PDGFB,SNORD43,SNORD83A,SYNGR1,AL031590.1
SE_02_098700507 chr22:39266532-39309466 Sample_02_0987 Blood K562_Control_1 507 16 1388 142 7 121 0 RNU86,RPL3,SNORD83B,PDGFB,SNORD43,SNORD83A,SYNGR1,AL031590.1
SE_02_109900829 chr22:39266600-39301132 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 829 13 1093 113 6 119 0 RNU86,RPL3,SNORD83B,PDGFB,SNORD43,SNORD83A,SYNGR1,AL031590.1
Genomic distribution of SEs associated with PDGFB
Genome Browser

The strength of the tissue affected by the gene

Expression of PDGFB

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)