SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000254122
Gene: PCDHGB7 Gene type: protein_coding
Strand: + External links:
Genomic region: chr5:141417645-141512975 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_120300701 chr5:141478380-141529362 Sample_02_1203 Brain NB1 701 13 1200 110 1 250 2524 PCDHGB5,PCDHGB1,PCDHGC4,PCDHGA1,PCDHGA6,PCDHGB2,PCDHGA2,PCDHGA4,PCDHGB3,PCDHGC3,PCDHGA3,PCDHGA11,PCDHGA8,PCDHGA10,PCDHGA12,PCDHGA9,PCDHGB6,PCDHGA7,PCDHGC5,PCDHGA5,PCDHGB7,DIAPH1,PCDHGB4,LOC100505658,HDAC3,TAF7,ARAP3
SE_01_011500205 chr5:141493850-141529717 Sample_01_0115 Skeletal Muscle myotube originated from skeletal muscle myoblast 205 9 868 68 0 230 1467 PCDHGB5,PCDHGB1,PCDHGC4,PCDHGA1,PCDHGA6,PCDHGB2,PCDHGA2,PCDHGA4,PCDHGB3,PCDHGC3,PCDHGA3,PCDHGA11,PCDHGA8,PCDHGA10,PCDHGA12,PCDHGA9,PCDHGB6,PCDHGA7,PCDHGC5,PCDHGB7,DIAPH1,PCDHGA5,PCDHGB4,LOC100505658,PCDHB15,FCHSD1
SE_02_121800066 chr5:141502726-141532534 Sample_02_1218 Bone marrow Daudi 66 10 739 54 0 230 1401 PCDHGB5,PCDHGB1,PCDHGC4,PCDHGA1,PCDHGA6,PCDHGB2,PCDHGA2,PCDHGA4,PCDHGB3,PCDHGC3,PCDHGA3,PCDHGA11,PCDHGA8,PCDHGA10,PCDHGA12,PCDHGA9,PCDHGB6,PCDHGA7,PCDHGC5,PCDHGB7,DIAPH1,PCDHGA5,PCDHGB4,LOC100505658
SE_02_094100063 chr5:141506725-141525667 Sample_02_0941 Brain T98G 63 7 469 33 0 193 980 PCDHGB5,PCDHGB1,PCDHGC4,PCDHGA1,PCDHGA6,PCDHGB2,PCDHGA2,PCDHGA4,PCDHGB3,PCDHGC3,PCDHGA3,PCDHGA11,PCDHGA8,PCDHGA10,PCDHGA12,PCDHGA9,PCDHGB6,PCDHGA7,PCDHGC5,PCDHGB7,DIAPH1,PCDHGA5,PCDHGB4,LOC100505658,TAF7,ARAP3,FCHSD1
SE_01_010700752 chr5:141506828-141530049 Sample_01_0107 Esophagus esophagus squamous epithelium 752 10 565 37 0 220 1309 PCDHGB5,PCDHGB1,PCDHGC4,PCDHGA1,PCDHGA6,PCDHGB2,PCDHGA2,PCDHGA4,PCDHGB3,PCDHGC3,PCDHGA3,PCDHGA11,PCDHGA8,PCDHGA10,PCDHGA12,PCDHGA9,PCDHGB6,PCDHGA7,PCDHGC5,PCDHGB7,DIAPH1,PCDHGA5,PCDHGB4,LOC100505658,PCDHB11,PCDHB15,FCHSD1,RELL2
Genomic distribution of SEs associated with PCDHGB7
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The strength of the tissue affected by the gene

Expression of PCDHGB7

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)