SEdb 2.0
  1. Search
  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000254245
Gene: PCDHGA3 Gene type: protein_coding
Strand: + External links:
Genomic region: chr5:141343829-141512975 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_120300701 chr5:141478380-141529362 Sample_02_1203 Brain NB1 701 13 1200 110 1 250 2524 PCDHGB5,PCDHGB1,PCDHGC4,PCDHGA1,PCDHGA6,PCDHGB2,PCDHGA2,PCDHGA4,PCDHGB3,PCDHGC3,PCDHGA3,PCDHGA11,PCDHGA8,PCDHGA10,PCDHGA12,PCDHGA9,PCDHGB6,PCDHGA7,PCDHGC5,PCDHGA5,PCDHGB7,DIAPH1,PCDHGB4,LOC100505658,HDAC3,TAF7,ARAP3
SE_02_121800066 chr5:141502726-141532534 Sample_02_1218 Bone marrow Daudi 66 10 739 54 0 230 1401 PCDHGB5,PCDHGB1,PCDHGC4,PCDHGA1,PCDHGA6,PCDHGB2,PCDHGA2,PCDHGA4,PCDHGB3,PCDHGC3,PCDHGA3,PCDHGA11,PCDHGA8,PCDHGA10,PCDHGA12,PCDHGA9,PCDHGB6,PCDHGA7,PCDHGC5,PCDHGB7,DIAPH1,PCDHGA5,PCDHGB4,LOC100505658
SE_01_010700752 chr5:141506828-141530049 Sample_01_0107 Esophagus esophagus squamous epithelium 752 10 565 37 0 220 1309 PCDHGB5,PCDHGB1,PCDHGC4,PCDHGA1,PCDHGA6,PCDHGB2,PCDHGA2,PCDHGA4,PCDHGB3,PCDHGC3,PCDHGA3,PCDHGA11,PCDHGA8,PCDHGA10,PCDHGA12,PCDHGA9,PCDHGB6,PCDHGA7,PCDHGC5,PCDHGB7,DIAPH1,PCDHGA5,PCDHGB4,LOC100505658,PCDHB11,PCDHB15,FCHSD1,RELL2
Genomic distribution of SEs associated with PCDHGA3
Genome Browser

The strength of the tissue affected by the gene

Expression of PCDHGA3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)