SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000100266
Gene: PACSIN2 Gene type: protein_coding
Strand: - External links:
Genomic region: chr22:42835412-43015149 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_098901456 chr22:42837506-42888516 Sample_02_0989 Kidney kidney cortex_WT 1456 20 1487 207 4 58 1080 ARFGAP3,PACSIN2,MCAT
SE_02_153000028 chr22:42853537-43015674 Sample_02_1530 Peripheral blood neutrophils_0BA0X 28 50 4715 610 12 207 1579 ARFGAP3,PACSIN2,LOC100506679,BIK,TTLL1,MCAT,A4GALT
SE_02_152900132 chr22:42855182-42940281 Sample_02_1529 Peripheral blood neutrophils_0BC75 132 32 2526 326 8 98 1301 ARFGAP3,PACSIN2,BIK,TTLL1,MCAT,A4GALT
SE_02_087500111 chr22:42855362-43018405 Sample_02_0875 Peripheral blood Peripheral blood-derived mast cells 111 58 4753 610 12 209 1579 ARFGAP3,PACSIN2,LOC100506679,TTLL1
SE_00_004600100 chr22:42867582-42963054 Sample_00_0046 Heart right ventricle_34y 100 50 2875 369 9 119 1246 PACSIN2,ARFGAP3,CYB5R3,TTLL1
SE_02_153100101 chr22:42879621-42939270 Sample_02_1531 Peripheral blood neutrophils_0B9ZK 101 19 1780 229 7 57 491 PACSIN2,ARFGAP3,BIK,TTLL1,MCAT,A4GALT
SE_00_005500507 chr22:42888948-42896868 Sample_00_0055 Spleen spleen 34y 507 4 242 29 2 15 210 PACSIN2,ARFGAP3,A4GALT,POLDIP3
SE_01_010400554 chr22:42889570-42944344 Sample_01_0104 Lung upper lobe of left lung 554 20 1638 218 5 40 267 PACSIN2,ARFGAP3
SE_00_005700215 chr22:42892361-42945031 Sample_00_0057 Heart right ventricle 3y 215 35 1568 211 5 45 162 PACSIN2,ARFGAP3,CYB5R3,TTLL1
SE_01_010700180 chr22:42901860-43037057 Sample_01_0107 Esophagus esophagus squamous epithelium 180 41 3976 511 9 148 336 PACSIN2,LOC100506679,ARFGAP3,TSPO,CYB5R3
SE_02_151300155 chr22:42908345-42941304 Sample_02_1513 Lung Transitional AT2->1 cells 155 7 955 131 2 21 58 PACSIN2,ARFGAP3
SE_02_142900111 chr22:42912903-43014866 Sample_02_1429 Blood GM12878_WT 111 28 2915 382 5 115 131 PACSIN2,LOC100506679
SE_02_049100453 chr22:42917782-43011749 Sample_02_0491 Pharyng Detroit 562-Control 453 27 2687 350 5 112 123 PACSIN2,LOC100506679,MCAT
SE_02_151400157 chr22:42918187-42941095 Sample_02_1514 Lung Differentiated AT1-like cells 157 8 682 92 1 20 0 PACSIN2,ARFGAP3
SE_02_153300068 chr22:42919415-42941285 Sample_02_1533 Lung purified primary alveolar epithelial type 2 cells 68 5 656 90 1 20 0 PACSIN2,ARFGAP3
SE_02_151200079 chr22:42919426-42941281 Sample_02_1512 Lung Purified AT2 cells 79 7 656 90 1 20 0 PACSIN2,ARFGAP3
SE_02_071600102 chr22:42919784-42962501 Sample_02_0716 Pancreas SUIT2_GFP 102 13 1269 157 2 56 123 PACSIN2,ARFGAP3,TTLL12
SE_02_132100805 chr22:42921384-42949764 Sample_02_1321 Connective Tissue HT1080_FUS-DDIT3 805 10 846 107 1 39 83 PACSIN2,TTLL12
SE_01_011700565 chr22:42931136-42940783 Sample_01_0117 Lung fibroblast of lung 565 8 308 35 0 12 0 PACSIN2,ARFGAP3
SE_02_070600104 chr22:42933454-42965795 Sample_02_0706 Pancreas SUIT2 WT 104 11 964 111 1 47 123 PACSIN2,ARFGAP3,TTLL12
SE_02_071400088 chr22:42936961-42965820 Sample_02_0714 Pancreas SUIT2_MTV 88 8 839 99 1 43 123 PACSIN2,ARFGAP3,TTLL12
SE_00_003100587 chr22:42959397-43016072 Sample_00_0031 Placenta placenta 587 9 1596 219 3 86 195 PACSIN2,ARFGAP3,TSPO
SE_02_093000430 chr22:42961892-43013114 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 430 34 1440 196 3 56 0 PACSIN2,LOC100506679,TSPO,ARFGAP3
SE_02_092900660 chr22:42961956-43013128 Sample_02_0929 Mid-gestation placenta trophoblast__CytT 660 25 1437 196 3 56 0 PACSIN2,LOC100506679,TSPO,ARFGAP3
Genomic distribution of SEs associated with PACSIN2
Genome Browser

The strength of the tissue affected by the gene

Expression of PACSIN2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)