SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000132661
Gene: NXT1 Gene type: protein_coding
Strand: + External links:
Genomic region: chr20:23350791-23354771 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_062000258 chr20:23061479-23107206 Sample_02_0620 Aortic Aortic Endothelial Cells_DF 258 12 1505 90 29 138 1180 CD93,THBD,LINC00656,SSTR4,NXT1,GZF1
SE_02_084100015 chr20:23081023-23259165 Sample_02_0841 Blood THP-1_untr 15 44 5564 387 48 321 1950 LINC00656,CD93,THBD,SSTR4,NXT1
SE_01_010400355 chr20:23102491-23163282 Sample_01_0104 Lung upper lobe of left lung 355 28 1965 168 33 113 575 LINC00656,CD93,THBD,SSTR4,NXT1
SE_02_062200037 chr20:23113654-23162767 Sample_02_0622 Blood EOL1_Naive 37 14 1606 132 20 77 575 LINC00656,CD93,NXT1
SE_02_094100111 chr20:23142270-23161755 Sample_02_0941 Brain T98G 111 5 638 38 6 43 0 LINC00656,NXT1
SE_02_077600738 chr20:23326852-23364136 Sample_02_0776 Pancreas EndoC-BH1 738 5 1023 118 3 43 536 LINC01431,NXT1,GZF1,CST8,CSTL1,CST11
SE_02_092100865 chr20:23344086-23363912 Sample_02_0921 Heart embryonic heart_CS22 865 4 595 80 0 28 536 LINC01431,NXT1,GZF1,NAPB
SE_00_002100705 chr20:23356681-23363997 Sample_00_0021 Lung lung_3y 705 2 209 25 0 5 210 NXT1,GZF1,CSTL1
SE_00_003900805 chr20:23356911-23363820 Sample_00_0039 Spleen spleen_3y 805 2 200 21 0 5 210 NXT1,GZF1,CST11,CST8,CSTL1
SE_00_002200990 chr20:23356924-23363776 Sample_00_0022 Lung lung_30y 990 2 194 20 0 5 210 NXT1,GZF1,CSTL1
SE_00_004000683 chr20:23357012-23363219 Sample_00_0040 Spleen spleen_30y 683 2 182 20 0 4 161 NXT1,GZF1,CST11,CST8,CSTL1
Genomic distribution of SEs associated with NXT1
Genome Browser

The strength of the tissue affected by the gene

Expression of NXT1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)